PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
ONIVA04G02070.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G02070.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G02330.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G02400.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G06510.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G14400.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G14400.4 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G21770.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G27320.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA04G28680.1 Flavonoid F3'H/CYP75B low borderline
ONIVA04G28740.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA05G03810.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA05G15200.1 Flavonoid F3'H/CYP75B low borderline
ONIVA05G16620.1 Flavonoid F3'H/CYP75B low borderline
ONIVA05G16630.1 Flavonoid F3'H/CYP75B low borderline
ONIVA05G17270.1 Flavonoid F3'H/CYP75B low borderline
ONIVA05G17840.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA05G20500.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA05G23620.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA05G24320.1 Flavonoid F3'H/CYP75B low borderline
ONIVA05G29230.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G07760.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G07930.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G07960.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G13170.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G14860.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G15520.1 Flavonoid F3'H/CYP75B low borderline
ONIVA06G17020.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G18770.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G18990.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G22770.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G23690.1 Flavonoid F3'H/CYP75B low borderline
ONIVA06G24750.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G24910.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G25720.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G26290.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G26320.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G26330.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA06G30530.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA07G05910.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA07G14670.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA07G20090.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G00380.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G00400.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G00420.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G01960.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G02090.1 Flavonoid F3'H/CYP75B medium pass
ONIVA08G14240.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA08G16570.1 Flavonoid F3'H/CYP75B low borderline
ONIVA08G22440.1 Flavonoid F3'H/CYP75B medium borderline