PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
Reset
Gene Pathway Family Confidence Status
ONIVA08G25690.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G03570.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G05200.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G09320.1 Flavonoid F3'H/CYP75B low borderline
ONIVA09G12130.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G12160.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G13160.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G19940.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA09G19950.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G01810.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G02190.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G03680.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G03700.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G04030.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G04040.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G06470.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G08890.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G10510.1 Flavonoid F3'H/CYP75B medium pass
ONIVA10G10520.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G17160.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G17160.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G17230.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G18230.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA10G18240.1 Flavonoid F3'H/CYP75B low borderline
ONIVA10G18800.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G01290.1 Flavonoid F3'H/CYP75B low borderline
ONIVA11G03030.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G03030.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G04800.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G11160.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G20640.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA11G20640.2 Flavonoid F3'H/CYP75B medium borderline
ONIVA12G00710.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA12G00890.1 Flavonoid F3'H/CYP75B low borderline
ONIVA12G05140.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA12G15520.1 Flavonoid F3'H/CYP75B medium borderline