PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status
ONIVA01G16760.1 Alkaloid GES medium pass
ONIVA01G25590.1 Alkaloid GES medium pass
ONIVA02G01560.1 Alkaloid GES medium pass
ONIVA02G17280.1 Alkaloid GES medium pass
ONIVA02G17280.2 Alkaloid GES medium pass
ONIVA02G17320.1 Alkaloid GES medium pass
ONIVA02G23310.1 Alkaloid GES medium pass
ONIVA02G23410.1 Alkaloid GES medium pass
ONIVA02G23460.1 Alkaloid GES low borderline
ONIVA02G23470.1 Alkaloid GES medium pass
ONIVA02G23470.2 Alkaloid GES medium pass
ONIVA02G23470.3 Alkaloid GES medium pass
ONIVA02G23500.1 Alkaloid GES medium pass
ONIVA02G23500.2 Alkaloid GES medium pass
ONIVA02G23550.1 Alkaloid GES medium pass
ONIVA03G18300.1 Alkaloid GES medium pass
ONIVA03G18310.1 Alkaloid GES medium pass
ONIVA03G19040.1 Alkaloid GES medium pass
ONIVA03G19050.1 Alkaloid GES medium pass
ONIVA03G19060.1 Alkaloid GES medium pass
ONIVA03G19070.1 Alkaloid GES medium pass
ONIVA03G19210.1 Alkaloid GES medium pass
ONIVA03G19230.1 Alkaloid GES low borderline
ONIVA04G00430.1 Alkaloid GES medium pass
ONIVA04G03610.1 Alkaloid GES medium pass
ONIVA04G06530.1 Alkaloid GES medium pass
ONIVA04G06550.1 Alkaloid GES medium pass
ONIVA04G06560.1 Alkaloid GES medium pass
ONIVA04G06610.1 Alkaloid GES medium pass
ONIVA04G06620.1 Alkaloid GES medium pass
ONIVA04G06640.1 Alkaloid GES low borderline
ONIVA04G06640.2 Alkaloid GES low borderline
ONIVA04G06640.3 Alkaloid GES low borderline
ONIVA04G06640.4 Alkaloid GES low borderline
ONIVA04G06640.5 Alkaloid GES low borderline
ONIVA04G06640.6 Alkaloid GES low borderline
ONIVA04G24100.1 Alkaloid GES low borderline
ONIVA05G03790.1 Alkaloid GES low borderline
ONIVA05G03790.2 Alkaloid GES low borderline
ONIVA05G11340.1 Alkaloid GES medium pass
ONIVA05G11340.2 Alkaloid GES low borderline
ONIVA05G11340.4 Alkaloid GES medium pass
ONIVA05G11340.5 Alkaloid GES medium pass
ONIVA05G19420.1 Alkaloid GES medium pass
ONIVA06G11490.1 Alkaloid GES low borderline
ONIVA06G12090.1 Alkaloid GES medium pass
ONIVA06G22070.1 Alkaloid GES low borderline
ONIVA06G22070.2 Alkaloid GES low borderline
ONIVA06G22070.3 Alkaloid GES low borderline
ONIVA06G22070.4 Alkaloid GES low borderline