PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
ONIVA01G00010.2 Flavonoid IFS medium borderline
ONIVA01G06140.1 Flavonoid IFS low borderline
ONIVA01G07210.1 Flavonoid IFS low borderline
ONIVA01G07210.2 Flavonoid IFS low borderline
ONIVA01G07210.3 Flavonoid IFS low borderline
ONIVA01G09140.1 Flavonoid IFS low borderline
ONIVA01G09150.1 Flavonoid IFS low borderline
ONIVA01G10270.1 Flavonoid IFS medium borderline
ONIVA01G10270.2 Flavonoid IFS medium borderline
ONIVA01G10290.1 Flavonoid IFS medium borderline
ONIVA01G10320.1 Flavonoid IFS medium borderline
ONIVA01G10320.2 Flavonoid IFS medium borderline
ONIVA01G10320.3 Flavonoid IFS medium borderline
ONIVA01G10480.1 Flavonoid IFS low borderline
ONIVA01G10590.1 Flavonoid IFS medium borderline
ONIVA01G14620.1 Flavonoid IFS low borderline
ONIVA01G18080.1 Flavonoid IFS medium borderline
ONIVA01G18920.1 Flavonoid IFS low borderline
ONIVA01G21800.1 Flavonoid IFS medium borderline
ONIVA01G25060.1 Flavonoid IFS low borderline
ONIVA01G25060.2 Flavonoid IFS low borderline
ONIVA01G26450.1 Flavonoid IFS low borderline
ONIVA01G26460.1 Flavonoid IFS low borderline
ONIVA01G26470.1 Flavonoid IFS low borderline
ONIVA01G39050.1 Flavonoid IFS low borderline
ONIVA01G39060.1 Flavonoid IFS low borderline
ONIVA01G39090.1 Flavonoid IFS low borderline
ONIVA01G39110.1 Flavonoid IFS low borderline
ONIVA01G50580.4 Flavonoid IFS low borderline
ONIVA02G03530.1 Flavonoid IFS medium borderline
ONIVA02G07520.1 Flavonoid IFS low borderline
ONIVA02G08090.1 Flavonoid IFS medium pass
ONIVA02G08130.1 Flavonoid IFS medium borderline
ONIVA02G09990.1 Flavonoid IFS medium borderline
ONIVA02G14400.1 Flavonoid IFS medium borderline
ONIVA02G19050.1 Flavonoid IFS medium borderline
ONIVA02G19050.3 Flavonoid IFS medium borderline
ONIVA02G19050.4 Flavonoid IFS medium borderline
ONIVA02G25670.1 Flavonoid IFS low borderline
ONIVA02G26660.1 Flavonoid IFS low borderline
ONIVA02G26660.2 Flavonoid IFS low borderline
ONIVA02G26660.3 Flavonoid IFS low borderline
ONIVA02G29610.1 Flavonoid IFS low borderline
ONIVA02G32100.1 Flavonoid IFS low borderline
ONIVA02G39360.1 Flavonoid IFS low borderline
ONIVA02G40150.1 Flavonoid IFS low borderline
ONIVA02G40150.2 Flavonoid IFS low borderline
ONIVA02G40150.3 Flavonoid IFS low borderline
ONIVA02G40680.1 Flavonoid IFS low borderline
ONIVA03G01130.1 Flavonoid IFS medium borderline