PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
Reset
Gene Pathway Family Confidence Status
ONIVA03G02330.1 Flavonoid IFS medium borderline
ONIVA03G02770.1 Flavonoid IFS low borderline
ONIVA03G02890.1 Flavonoid IFS low borderline
ONIVA03G02980.1 Flavonoid IFS low borderline
ONIVA03G03000.1 Flavonoid IFS low borderline
ONIVA03G04920.1 Flavonoid IFS low borderline
ONIVA03G11140.1 Flavonoid IFS medium borderline
ONIVA03G19440.1 Flavonoid IFS medium borderline
ONIVA03G20740.1 Flavonoid IFS low borderline
ONIVA03G23930.1 Flavonoid IFS medium borderline
ONIVA03G24970.1 Flavonoid IFS medium borderline
ONIVA03G28680.1 Flavonoid IFS medium borderline
ONIVA03G29230.1 Flavonoid IFS low borderline
ONIVA03G43130.2 Flavonoid IFS medium borderline
ONIVA04G00050.1 Flavonoid IFS medium borderline
ONIVA04G01000.1 Flavonoid IFS medium borderline
ONIVA04G01250.1 Flavonoid IFS low borderline
ONIVA04G09580.1 Flavonoid IFS medium borderline
ONIVA04G13750.1 Flavonoid IFS low borderline
ONIVA04G14400.1 Flavonoid IFS medium borderline
ONIVA04G14400.3 Flavonoid IFS medium borderline
ONIVA04G17350.2 Flavonoid IFS low borderline
ONIVA04G18400.1 Flavonoid IFS medium borderline
ONIVA04G20010.1 Flavonoid IFS low borderline
ONIVA04G20730.1 Flavonoid IFS low borderline
ONIVA04G20950.1 Flavonoid IFS low borderline
ONIVA04G25670.1 Flavonoid IFS low borderline
ONIVA04G28730.1 Flavonoid IFS low borderline
ONIVA05G00130.1 Flavonoid IFS low borderline
ONIVA05G07190.1 Flavonoid IFS low borderline
ONIVA05G07890.1 Flavonoid IFS low borderline
ONIVA05G13310.1 Flavonoid IFS low borderline
ONIVA05G14660.1 Flavonoid IFS low borderline
ONIVA05G19250.1 Flavonoid IFS low borderline
ONIVA05G22030.1 Flavonoid IFS medium borderline
ONIVA06G00090.1 Flavonoid IFS medium borderline
ONIVA06G01070.1 Flavonoid IFS low borderline
ONIVA06G02150.1 Flavonoid IFS low borderline
ONIVA06G02150.2 Flavonoid IFS low borderline
ONIVA06G06820.1 Flavonoid IFS low borderline
ONIVA06G06830.1 Flavonoid IFS low borderline
ONIVA06G11840.1 Flavonoid IFS medium borderline
ONIVA06G14720.1 Flavonoid IFS low borderline
ONIVA06G18770.1 Flavonoid IFS medium borderline
ONIVA06G22560.1 Flavonoid IFS low borderline
ONIVA06G25670.1 Flavonoid IFS low borderline
ONIVA06G26300.1 Flavonoid IFS medium borderline
ONIVA06G26310.1 Flavonoid IFS medium borderline
ONIVA06G26340.1 Flavonoid IFS medium borderline
ONIVA07G09350.1 Flavonoid IFS medium borderline