PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
ONIVA07G09740.1 Flavonoid IFS low borderline
ONIVA07G10710.1 Flavonoid IFS medium borderline
ONIVA07G13050.1 Flavonoid IFS low borderline
ONIVA07G13050.2 Flavonoid IFS low borderline
ONIVA07G14630.1 Flavonoid IFS low borderline
ONIVA07G14660.1 Flavonoid IFS low borderline
ONIVA07G14680.2 Flavonoid IFS low borderline
ONIVA07G14700.1 Flavonoid IFS low borderline
ONIVA07G14740.1 Flavonoid IFS low borderline
ONIVA07G15000.1 Flavonoid IFS low borderline
ONIVA07G19370.2 Flavonoid IFS medium borderline
ONIVA07G24010.1 Flavonoid IFS low borderline
ONIVA07G26210.1 Flavonoid IFS low borderline
ONIVA08G00410.1 Flavonoid IFS medium borderline
ONIVA08G06300.1 Flavonoid IFS medium borderline
ONIVA08G08870.1 Flavonoid IFS low borderline
ONIVA08G08950.1 Flavonoid IFS low borderline
ONIVA08G14250.1 Flavonoid IFS medium borderline
ONIVA08G18790.1 Flavonoid IFS medium borderline
ONIVA08G19280.1 Flavonoid IFS medium borderline
ONIVA08G19890.1 Flavonoid IFS low borderline
ONIVA08G22430.1 Flavonoid IFS medium borderline
ONIVA08G22470.1 Flavonoid IFS medium borderline
ONIVA08G25750.1 Flavonoid IFS medium borderline
ONIVA09G07550.1 Flavonoid IFS low borderline
ONIVA09G12140.1 Flavonoid IFS medium borderline
ONIVA09G12140.2 Flavonoid IFS medium borderline
ONIVA09G12150.1 Flavonoid IFS medium borderline
ONIVA09G18350.2 Flavonoid IFS medium borderline
ONIVA09G18350.3 Flavonoid IFS medium borderline
ONIVA09G18630.1 Flavonoid IFS low borderline
ONIVA10G05010.1 Flavonoid IFS medium borderline
ONIVA10G05710.1 Flavonoid IFS low borderline
ONIVA10G07870.1 Flavonoid IFS low borderline
ONIVA10G15210.1 Flavonoid IFS low borderline
ONIVA10G17240.1 Flavonoid IFS low borderline
ONIVA10G17250.1 Flavonoid IFS medium borderline
ONIVA10G17790.1 Flavonoid IFS low borderline
ONIVA10G17790.2 Flavonoid IFS low borderline
ONIVA10G21600.1 Flavonoid IFS low borderline
ONIVA11G01290.2 Flavonoid IFS low borderline
ONIVA11G02540.1 Flavonoid IFS low borderline
ONIVA11G02550.1 Flavonoid IFS low borderline
ONIVA11G02550.2 Flavonoid IFS low borderline
ONIVA11G02550.3 Flavonoid IFS low borderline
ONIVA11G02720.1 Flavonoid IFS low borderline
ONIVA11G05040.1 Flavonoid IFS low borderline
ONIVA11G09850.1 Flavonoid IFS low borderline
ONIVA11G11190.1 Flavonoid IFS medium borderline
ONIVA11G20640.3 Flavonoid IFS medium borderline