PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
ONIVA04G28140.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
ONIVA04G30040.1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
ONIVA05G00170.1 Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
ONIVA05G21810.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
ONIVA05G21810.2 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
ONIVA05G25910.1 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
ONIVA06G00340.1 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
ONIVA06G00340.2 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
ONIVA06G00340.3 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
ONIVA06G01860.1 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
ONIVA06G03790.1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
ONIVA06G10250.1 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
ONIVA06G10270.1 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
ONIVA06G12420.1 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
ONIVA06G12970.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
ONIVA06G12970.2 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
ONIVA06G14240.1 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
ONIVA06G14330.2 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
ONIVA06G15290.1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
ONIVA06G31490.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
ONIVA07G15440.1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
ONIVA07G23540.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
ONIVA07G25550.1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
ONIVA08G00360.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
ONIVA08G04720.1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
ONIVA08G04720.2 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
ONIVA08G08400.1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
ONIVA08G14760.1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA08G14790.1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA08G14800.1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA08G17830.1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
ONIVA09G01180.1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
ONIVA09G01640.1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
ONIVA09G01640.2 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
ONIVA09G06350.1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
ONIVA09G06350.2 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
ONIVA09G06490.1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA09G06490.2 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA09G06490.3 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
ONIVA09G09380.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
ONIVA09G09590.1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
ONIVA09G12590.1 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
ONIVA09G20430.1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
ONIVA10G15320.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
ONIVA11G01930.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
ONIVA11G18710.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
ONIVA11G18710.2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
ONIVA12G05450.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
ONIVA12G07090.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
ONIVA12G17610.1 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH