PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
ONIVA07G08380.8 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA07G08380.9 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA07G11920.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA07G23410.1 Phenylpropanoid POD medium pass POD__00007__sp_P0C5C9_REHYA_ORYSJ
ONIVA07G23420.1 Phenylpropanoid POD medium pass POD__00007__sp_P0C5C9_REHYA_ORYSJ
ONIVA07G23440.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
ONIVA07G23450.1 Phenylpropanoid POD low borderline POD__00010__sp_P84516_PER1_SORBI
ONIVA07G23460.1 Phenylpropanoid POD low borderline POD__00010__sp_P84516_PER1_SORBI
ONIVA07G25960.1 Phenylpropanoid POD low borderline POD__00001__sp_A5H452_PER70_MAIZE
ONIVA07G25960.2 Phenylpropanoid POD low borderline POD__00001__sp_A5H452_PER70_MAIZE
ONIVA07G25960.3 Phenylpropanoid POD low borderline POD__00001__sp_A5H452_PER70_MAIZE
ONIVA07G25980.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
ONIVA07G27190.1 Phenylpropanoid POD low borderline POD__00020__sp_Q9FE01_APX2_ORYSJ
ONIVA08G09590.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA08G09590.2 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA08G09590.3 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA08G16740.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
ONIVA08G16910.1 Phenylpropanoid POD low borderline POD__00001__sp_A5H452_PER70_MAIZE
ONIVA08G16920.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
ONIVA08G23850.1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
ONIVA08G25870.1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
ONIVA09G19050.1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
ONIVA10G00240.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
ONIVA10G01220.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
ONIVA10G14720.1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
ONIVA11G09780.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
ONIVA11G16110.1 Phenylpropanoid POD low borderline POD__00024__sp_Q9SCX8_PPA17_ARATH
ONIVA12G02690.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA12G04350.1 Phenylpropanoid POD low borderline POD__00015__sp_Q69SV0_APX8_ORYSJ
ONIVA12G04350.2 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
ONIVA12G05120.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE