PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA01G20620.1 Alkaloid PYKS low borderline
ONIVA01G25070.1 Alkaloid PYKS high pass
ONIVA01G43400.1 Alkaloid PYKS high pass
ONIVA02G09610.1 Alkaloid PYKS low borderline
ONIVA02G34480.1 Alkaloid PYKS low borderline
ONIVA02G39740.1 Alkaloid PYKS low borderline
ONIVA03G04450.1 Alkaloid PYKS low borderline
ONIVA03G05960.1 Alkaloid PYKS low borderline
ONIVA03G09500.1 Alkaloid PYKS low borderline
ONIVA03G10980.1 Alkaloid PYKS low borderline
ONIVA03G21120.1 Alkaloid PYKS low borderline
ONIVA03G21280.1 Alkaloid PYKS low borderline
ONIVA03G21290.1 Alkaloid PYKS low borderline
ONIVA03G30360.1 Alkaloid PYKS low borderline
ONIVA04G00160.1 Alkaloid PYKS high pass
ONIVA04G00580.1 Alkaloid PYKS low borderline
ONIVA04G05320.1 Alkaloid PYKS high pass
ONIVA05G07970.1 Alkaloid PYKS medium pass
ONIVA05G07990.1 Alkaloid PYKS high pass
ONIVA05G15280.1 Alkaloid PYKS high pass
ONIVA05G28080.1 Alkaloid PYKS low borderline
ONIVA05G28710.1 Alkaloid PYKS low borderline
ONIVA06G11570.1 Alkaloid PYKS low borderline
ONIVA06G11630.1 Alkaloid PYKS low borderline
ONIVA06G11640.1 Alkaloid PYKS low borderline
ONIVA06G23870.1 Alkaloid PYKS low borderline
ONIVA07G01870.1 Alkaloid PYKS low borderline
ONIVA07G09520.1 Alkaloid PYKS high pass
ONIVA07G13860.1 Alkaloid PYKS high pass
ONIVA07G13870.1 Alkaloid PYKS high pass
ONIVA08G06690.1 Alkaloid PYKS low borderline
ONIVA09G06380.1 Alkaloid PYKS low borderline
ONIVA09G16060.1 Alkaloid PYKS high pass
ONIVA09G16090.1 Alkaloid PYKS high pass
ONIVA09G16110.1 Alkaloid PYKS high pass
ONIVA10G02480.1 Alkaloid PYKS high pass
ONIVA10G03480.1 Alkaloid PYKS high pass
ONIVA10G03490.1 Alkaloid PYKS high pass
ONIVA10G09390.1 Alkaloid PYKS low borderline
ONIVA10G13160.1 Alkaloid PYKS low borderline
ONIVA10G15130.1 Alkaloid PYKS medium pass
ONIVA10G17690.1 Alkaloid PYKS high pass
ONIVA10G17710.1 Alkaloid PYKS medium pass
ONIVA11G14960.1 Alkaloid PYKS high pass
ONIVA11G14970.1 Alkaloid PYKS medium pass
ONIVA11G15000.1 Alkaloid PYKS high pass
ONIVA11G15010.1 Alkaloid PYKS high pass
ONIVA11G15020.1 Alkaloid PYKS high pass
ONIVA11G15050.1 Alkaloid PYKS high pass
ONIVA11G18140.1 Alkaloid PYKS low borderline