PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
ONIVA01G00010.1 Alkaloid T3O medium borderline
ONIVA01G00010.2 Alkaloid T3O medium borderline
ONIVA01G00050.1 Alkaloid T3O medium borderline
ONIVA01G00070.1 Alkaloid T3O medium borderline
ONIVA01G06140.1 Alkaloid T3O medium pass
ONIVA01G07210.1 Alkaloid T3O medium pass
ONIVA01G07210.2 Alkaloid T3O medium pass
ONIVA01G07210.3 Alkaloid T3O medium pass
ONIVA01G09140.1 Alkaloid T3O medium pass
ONIVA01G09150.1 Alkaloid T3O medium pass
ONIVA01G10310.1 Alkaloid T3O medium borderline
ONIVA01G10320.1 Alkaloid T3O medium borderline
ONIVA01G10320.2 Alkaloid T3O medium borderline
ONIVA01G10500.1 Alkaloid T3O medium pass
ONIVA01G10590.1 Alkaloid T3O medium borderline
ONIVA01G14620.1 Alkaloid T3O low borderline
ONIVA01G18080.1 Alkaloid T3O medium borderline
ONIVA01G18920.1 Alkaloid T3O low borderline
ONIVA01G21290.1 Alkaloid T3O medium borderline
ONIVA01G21290.2 Alkaloid T3O medium borderline
ONIVA01G21800.1 Alkaloid T3O medium borderline
ONIVA01G31760.1 Alkaloid T3O high pass
ONIVA01G39060.1 Alkaloid T3O low borderline
ONIVA01G39090.1 Alkaloid T3O low borderline
ONIVA01G39110.1 Alkaloid T3O low borderline
ONIVA01G50010.1 Alkaloid T3O low borderline
ONIVA01G50580.1 Alkaloid T3O medium pass
ONIVA01G50580.2 Alkaloid T3O medium pass
ONIVA01G50580.3 Alkaloid T3O medium borderline
ONIVA01G50580.4 Alkaloid T3O low borderline
ONIVA02G00730.1 Alkaloid T3O low borderline
ONIVA02G03530.1 Alkaloid T3O medium borderline
ONIVA02G07470.4 Alkaloid T3O medium pass
ONIVA02G08090.1 Alkaloid T3O medium borderline
ONIVA02G08130.1 Alkaloid T3O medium borderline
ONIVA02G08140.1 Alkaloid T3O medium borderline
ONIVA02G09990.1 Alkaloid T3O medium borderline
ONIVA02G19050.1 Alkaloid T3O medium borderline
ONIVA02G19050.3 Alkaloid T3O medium borderline
ONIVA02G19050.4 Alkaloid T3O medium borderline
ONIVA02G19110.1 Alkaloid T3O medium pass
ONIVA02G19110.3 Alkaloid T3O medium borderline
ONIVA02G21000.1 Alkaloid T3O medium borderline
ONIVA02G23330.1 Alkaloid T3O medium borderline
ONIVA02G23370.1 Alkaloid T3O medium borderline
ONIVA02G23400.1 Alkaloid T3O medium borderline
ONIVA02G23420.1 Alkaloid T3O medium borderline
ONIVA02G23430.1 Alkaloid T3O medium borderline
ONIVA02G23540.1 Alkaloid T3O medium borderline
ONIVA02G25440.1 Alkaloid T3O medium pass