PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
ONIVA05G29230.1 Alkaloid T3O medium borderline
ONIVA06G00090.1 Alkaloid T3O medium borderline
ONIVA06G00640.1 Alkaloid T3O medium pass
ONIVA06G01070.1 Alkaloid T3O low borderline
ONIVA06G07930.1 Alkaloid T3O medium borderline
ONIVA06G07960.1 Alkaloid T3O medium borderline
ONIVA06G14720.1 Alkaloid T3O medium pass
ONIVA06G14860.1 Alkaloid T3O medium borderline
ONIVA06G17020.1 Alkaloid T3O medium borderline
ONIVA06G18770.1 Alkaloid T3O medium borderline
ONIVA06G18770.2 Alkaloid T3O medium borderline
ONIVA06G18990.1 Alkaloid T3O medium borderline
ONIVA06G19030.1 Alkaloid T3O medium borderline
ONIVA06G22530.1 Alkaloid T3O medium pass
ONIVA06G22810.1 Alkaloid T3O medium pass
ONIVA06G24750.1 Alkaloid T3O medium borderline
ONIVA06G24910.1 Alkaloid T3O medium borderline
ONIVA06G26300.1 Alkaloid T3O medium borderline
ONIVA06G26310.1 Alkaloid T3O medium borderline
ONIVA06G26320.1 Alkaloid T3O medium borderline
ONIVA06G30530.1 Alkaloid T3O medium borderline
ONIVA07G05910.1 Alkaloid T3O medium borderline
ONIVA07G09350.1 Alkaloid T3O medium borderline
ONIVA07G14630.1 Alkaloid T3O medium pass
ONIVA07G14660.1 Alkaloid T3O low borderline
ONIVA07G14670.1 Alkaloid T3O medium pass
ONIVA07G14680.1 Alkaloid T3O medium pass
ONIVA07G14680.2 Alkaloid T3O low borderline
ONIVA07G14700.1 Alkaloid T3O medium pass
ONIVA07G14740.1 Alkaloid T3O medium pass
ONIVA07G14760.1 Alkaloid T3O medium pass
ONIVA07G20090.1 Alkaloid T3O medium borderline
ONIVA07G26210.1 Alkaloid T3O medium pass
ONIVA08G00380.1 Alkaloid T3O medium borderline
ONIVA08G00420.1 Alkaloid T3O medium borderline
ONIVA08G01960.1 Alkaloid T3O medium borderline
ONIVA08G08870.1 Alkaloid T3O medium pass
ONIVA08G14250.1 Alkaloid T3O medium borderline
ONIVA08G14550.1 Alkaloid T3O medium pass
ONIVA08G18790.1 Alkaloid T3O medium borderline
ONIVA08G22430.1 Alkaloid T3O medium borderline
ONIVA08G22440.1 Alkaloid T3O medium borderline
ONIVA08G22470.1 Alkaloid T3O medium borderline
ONIVA08G25750.1 Alkaloid T3O medium borderline
ONIVA09G01200.1 Alkaloid T3O low borderline
ONIVA09G01200.2 Alkaloid T3O low borderline
ONIVA09G03570.1 Alkaloid T3O medium borderline
ONIVA09G05200.1 Alkaloid T3O medium borderline
ONIVA09G12130.1 Alkaloid T3O medium borderline
ONIVA09G12140.1 Alkaloid T3O medium borderline