PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
ONIVA05G11340.5 Terpenoid TPS medium pass TPS__00159__sp_Q5GJ59_TPS7_MAIZE
ONIVA05G19420.1 Terpenoid TPS low borderline TPS__00031__sp_A0A1X9ISH5_KSL3_ISORU
ONIVA06G12090.1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA06G22070.1 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.2 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.3 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.4 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.5 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.6 Terpenoid TPS low borderline TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G22070.7 Terpenoid TPS low borderline TPS__00075__sp_C7E5W0_FARS_ZEAPE
ONIVA06G22070.8 Terpenoid TPS medium pass TPS__00155__sp_Q2NM15_FARS_MAIZE
ONIVA06G22070.9 Terpenoid TPS medium pass TPS__00074__sp_C7E5V9_FARS_ZEADI
ONIVA06G26790.1 Terpenoid TPS medium pass TPS__00154__sp_Q29VN3_TPS8_MAIZE
ONIVA08G02330.1 Terpenoid TPS medium pass TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE
ONIVA08G02650.1 Terpenoid TPS medium pass TPS__00058__sp_B2C4D0_TS23B_MAIZE
ONIVA08G05620.1 Terpenoid TPS medium pass TPS__00159__sp_Q5GJ59_TPS7_MAIZE
ONIVA10G06480.1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA10G06480.2 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA10G14120.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
ONIVA10G14120.2 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
ONIVA10G15370.1 Terpenoid TPS medium pass TPS__00153__sp_Q29VN2_TPS2_MAIZE
ONIVA11G19210.1 Terpenoid TPS medium pass TPS__00159__sp_Q5GJ59_TPS7_MAIZE
ONIVA11G19220.1 Terpenoid TPS medium pass TPS__00159__sp_Q5GJ59_TPS7_MAIZE
ONIVA12G12590.1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA12G12630.1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA12G12630.2 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
ONIVA12G12630.3 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC