PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
ONIVA02G30130.1 Flavonoid UFGT medium pass
ONIVA02G35140.1 Flavonoid UFGT medium pass
ONIVA02G35150.1 Flavonoid UFGT high pass
ONIVA02G35170.1 Flavonoid UFGT medium pass
ONIVA02G38380.1 Flavonoid UFGT high pass
ONIVA03G06160.1 Flavonoid UFGT high pass
ONIVA03G08930.1 Flavonoid UFGT medium pass
ONIVA03G18890.1 Flavonoid UFGT medium pass
ONIVA03G23660.1 Flavonoid UFGT medium pass
ONIVA03G23670.1 Flavonoid UFGT medium pass
ONIVA03G23670.2 Flavonoid UFGT high pass
ONIVA03G26300.1 Flavonoid UFGT medium pass
ONIVA03G26310.1 Flavonoid UFGT medium pass
ONIVA03G29790.1 Flavonoid UFGT high pass
ONIVA03G31710.1 Flavonoid UFGT medium pass
ONIVA03G32330.1 Flavonoid UFGT medium pass
ONIVA03G32340.1 Flavonoid UFGT high pass
ONIVA03G33950.1 Flavonoid UFGT low borderline
ONIVA03G35160.1 Flavonoid UFGT high pass
ONIVA03G36220.1 Flavonoid UFGT medium pass
ONIVA03G36240.1 Flavonoid UFGT medium pass
ONIVA03G36250.1 Flavonoid UFGT medium pass
ONIVA03G36280.1 Flavonoid UFGT medium pass
ONIVA03G36280.2 Flavonoid UFGT medium pass
ONIVA03G39400.1 Flavonoid UFGT medium pass
ONIVA03G39850.1 Flavonoid UFGT medium pass
ONIVA03G41180.1 Flavonoid UFGT medium pass
ONIVA03G42210.1 Flavonoid UFGT low borderline
ONIVA03G42350.1 Flavonoid UFGT medium pass
ONIVA04G04070.1 Flavonoid UFGT high pass
ONIVA04G04210.1 Flavonoid UFGT low borderline
ONIVA04G04240.1 Flavonoid UFGT medium pass
ONIVA04G04260.1 Flavonoid UFGT medium pass
ONIVA04G04310.1 Flavonoid UFGT high pass
ONIVA04G04890.1 Flavonoid UFGT medium pass
ONIVA04G04900.1 Flavonoid UFGT high pass
ONIVA04G05330.1 Flavonoid UFGT medium pass
ONIVA04G05900.1 Flavonoid UFGT medium pass
ONIVA04G05910.1 Flavonoid UFGT medium pass
ONIVA04G06330.1 Flavonoid UFGT high pass
ONIVA04G12630.2 Flavonoid UFGT medium pass
ONIVA04G16380.1 Flavonoid UFGT medium pass
ONIVA04G17420.1 Flavonoid UFGT high pass
ONIVA04G17430.1 Flavonoid UFGT medium pass
ONIVA04G17500.1 Flavonoid UFGT medium pass
ONIVA04G17500.2 Flavonoid UFGT medium pass
ONIVA04G19580.1 Flavonoid UFGT medium pass
ONIVA04G19590.1 Flavonoid UFGT medium pass
ONIVA04G19600.1 Flavonoid UFGT medium pass
ONIVA04G20360.1 Flavonoid UFGT medium pass