PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
Reset
Gene Pathway Family Confidence Status
ONIVA04G20390.1 Flavonoid UFGT medium pass
ONIVA04G26020.1 Flavonoid UFGT medium pass
ONIVA05G05550.1 Flavonoid UFGT medium pass
ONIVA05G05570.1 Flavonoid UFGT medium pass
ONIVA05G05800.1 Flavonoid UFGT medium pass
ONIVA05G22000.1 Flavonoid UFGT medium pass
ONIVA05G22440.1 Flavonoid UFGT medium pass
ONIVA05G22460.1 Flavonoid UFGT medium pass
ONIVA05G22470.1 Flavonoid UFGT high pass
ONIVA05G24100.1 Flavonoid UFGT high pass
ONIVA05G24120.1 Flavonoid UFGT high pass
ONIVA05G24130.1 Flavonoid UFGT high pass
ONIVA05G24140.1 Flavonoid UFGT high pass
ONIVA05G26250.1 Flavonoid UFGT medium pass
ONIVA06G03540.1 Flavonoid UFGT medium pass
ONIVA06G06850.1 Flavonoid UFGT high pass
ONIVA06G08330.1 Flavonoid UFGT medium pass
ONIVA06G08500.1 Flavonoid UFGT high pass
ONIVA06G08880.1 Flavonoid UFGT medium pass
ONIVA06G12210.1 Flavonoid UFGT medium pass
ONIVA06G12650.1 Flavonoid UFGT medium pass
ONIVA06G12660.1 Flavonoid UFGT medium pass
ONIVA06G12670.1 Flavonoid UFGT medium pass
ONIVA06G12700.1 Flavonoid UFGT medium pass
ONIVA06G12980.1 Flavonoid UFGT high pass
ONIVA06G13030.1 Flavonoid UFGT high pass
ONIVA06G13040.1 Flavonoid UFGT medium pass
ONIVA06G14770.1 Flavonoid UFGT medium pass
ONIVA06G14770.2 Flavonoid UFGT low borderline
ONIVA06G14770.3 Flavonoid UFGT medium pass
ONIVA06G15320.1 Flavonoid UFGT medium pass
ONIVA06G15330.1 Flavonoid UFGT high pass
ONIVA06G16620.1 Flavonoid UFGT high pass
ONIVA06G22030.1 Flavonoid UFGT medium pass
ONIVA06G22060.2 Flavonoid UFGT medium pass
ONIVA06G22060.3 Flavonoid UFGT medium pass
ONIVA06G23530.1 Flavonoid UFGT medium pass
ONIVA06G23590.1 Flavonoid UFGT medium pass
ONIVA06G25640.1 Flavonoid UFGT high pass
ONIVA07G06930.1 Flavonoid UFGT medium pass
ONIVA07G07070.1 Flavonoid UFGT medium pass
ONIVA07G07090.1 Flavonoid UFGT high pass
ONIVA07G07090.2 Flavonoid UFGT high pass
ONIVA07G07350.1 Flavonoid UFGT medium pass
ONIVA07G07990.1 Flavonoid UFGT medium pass
ONIVA07G09760.1 Flavonoid UFGT low borderline
ONIVA07G09760.2 Flavonoid UFGT low borderline
ONIVA07G13240.1 Flavonoid UFGT medium pass
ONIVA07G13270.1 Flavonoid UFGT medium pass
ONIVA07G13290.1 Flavonoid UFGT medium pass