PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
ONIVA07G13980.1 Flavonoid UFGT high pass
ONIVA07G14000.1 Flavonoid UFGT high pass
ONIVA07G14010.1 Flavonoid UFGT medium pass
ONIVA07G14020.1 Flavonoid UFGT medium pass
ONIVA07G14040.1 Flavonoid UFGT high pass
ONIVA07G15370.1 Flavonoid UFGT medium pass
ONIVA07G15370.2 Flavonoid UFGT medium pass
ONIVA07G15370.3 Flavonoid UFGT high pass
ONIVA07G15370.4 Flavonoid UFGT medium pass
ONIVA07G15370.5 Flavonoid UFGT high pass
ONIVA07G15370.6 Flavonoid UFGT high pass
ONIVA07G17220.1 Flavonoid UFGT high pass
ONIVA07G22080.1 Flavonoid UFGT medium pass
ONIVA07G24860.1 Flavonoid UFGT high pass
ONIVA07G25600.1 Flavonoid UFGT medium pass
ONIVA08G08650.1 Flavonoid UFGT medium pass
ONIVA08G14260.1 Flavonoid UFGT low borderline
ONIVA08G14260.2 Flavonoid UFGT low borderline
ONIVA08G14950.1 Flavonoid UFGT high pass
ONIVA08G20750.1 Flavonoid UFGT high pass
ONIVA08G20760.1 Flavonoid UFGT high pass
ONIVA08G22090.1 Flavonoid UFGT high pass
ONIVA08G22100.1 Flavonoid UFGT high pass
ONIVA08G22110.1 Flavonoid UFGT low borderline
ONIVA08G22120.1 Flavonoid UFGT high pass
ONIVA08G22130.1 Flavonoid UFGT medium pass
ONIVA09G01560.1 Flavonoid UFGT low borderline
ONIVA09G04230.1 Flavonoid UFGT high pass
ONIVA09G14940.1 Flavonoid UFGT medium pass
ONIVA09G14950.1 Flavonoid UFGT medium pass
ONIVA09G14960.1 Flavonoid UFGT low borderline
ONIVA09G17630.1 Flavonoid UFGT high pass
ONIVA09G17640.1 Flavonoid UFGT medium pass
ONIVA09G17640.2 Flavonoid UFGT medium pass
ONIVA09G17640.3 Flavonoid UFGT medium pass
ONIVA09G17640.4 Flavonoid UFGT medium pass
ONIVA09G17640.5 Flavonoid UFGT medium pass
ONIVA09G17640.6 Flavonoid UFGT high pass
ONIVA10G03500.1 Flavonoid UFGT high pass
ONIVA10G05090.1 Flavonoid UFGT high pass
ONIVA10G05420.1 Flavonoid UFGT medium pass
ONIVA10G05420.2 Flavonoid UFGT medium pass
ONIVA10G10640.1 Flavonoid UFGT medium pass
ONIVA10G17760.1 Flavonoid UFGT high pass
ONIVA11G11740.1 Flavonoid UFGT high pass
ONIVA11G11850.1 Flavonoid UFGT medium pass
ONIVA11G11920.1 Flavonoid UFGT high pass
ONIVA11G12360.1 Flavonoid UFGT medium pass
ONIVA11G12470.1 Flavonoid UFGT low borderline
ONIVA11G12480.1 Flavonoid UFGT high pass