PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA02G11030.2 Flavonoid IFR low borderline
ONIVA02G22510.1 Flavonoid IFR low borderline
ONIVA02G32210.1 Flavonoid IFR high pass
ONIVA02G32210.2 Flavonoid IFR high pass
ONIVA02G40050.1 Flavonoid IFR low borderline
ONIVA03G02610.1 Flavonoid IFR low borderline
ONIVA03G12190.1 Flavonoid IFR high pass
ONIVA03G14000.1 Flavonoid IFR low borderline
ONIVA03G14000.2 Flavonoid IFR low borderline
ONIVA03G14000.3 Flavonoid IFR low borderline
ONIVA03G18410.1 Flavonoid IFR medium pass
ONIVA03G18740.1 Flavonoid IFR low borderline
ONIVA03G40890.1 Flavonoid IFR low borderline
ONIVA04G06210.1 Flavonoid IFR low borderline
ONIVA04G07070.1 Flavonoid IFR low borderline
ONIVA04G07070.3 Flavonoid IFR low borderline
ONIVA05G00690.1 Flavonoid IFR low borderline
ONIVA05G00690.2 Flavonoid IFR low borderline
ONIVA05G00690.3 Flavonoid IFR low borderline
ONIVA05G09700.1 Flavonoid IFR high pass
ONIVA05G15630.1 Flavonoid IFR high pass
ONIVA05G30030.1 Flavonoid IFR low borderline
ONIVA05G30030.2 Flavonoid IFR low borderline
ONIVA06G17930.1 Flavonoid IFR high pass
ONIVA06G17930.2 Flavonoid IFR high pass
ONIVA06G29250.1 Flavonoid IFR low borderline
ONIVA07G25710.1 Flavonoid IFR low borderline
ONIVA08G26140.1 Flavonoid IFR medium pass
ONIVA09G18160.1 Flavonoid IFR low borderline
ONIVA10G00050.1 Flavonoid IFR low borderline
ONIVA10G09450.1 Flavonoid IFR low borderline
ONIVA10G09450.2 Flavonoid IFR low borderline
ONIVA11G12980.1 Flavonoid IFR low borderline
ONIVA11G12980.2 Flavonoid IFR low borderline
ONIVA12G06140.1 Flavonoid IFR high pass
ONIVA12G10320.1 Flavonoid IFR high pass
ONIVA12G10320.2 Flavonoid IFR high pass
ONIVA12G10340.1 Flavonoid IFR high pass
ONIVA01G00010.2 Flavonoid IFS medium borderline
ONIVA01G06140.1 Flavonoid IFS low borderline
ONIVA01G07210.1 Flavonoid IFS low borderline
ONIVA01G07210.2 Flavonoid IFS low borderline
ONIVA01G07210.3 Flavonoid IFS low borderline
ONIVA01G09140.1 Flavonoid IFS low borderline
ONIVA01G09150.1 Flavonoid IFS low borderline
ONIVA01G10270.1 Flavonoid IFS medium borderline
ONIVA01G10270.2 Flavonoid IFS medium borderline
ONIVA01G10290.1 Flavonoid IFS medium borderline
ONIVA01G10320.1 Flavonoid IFS medium borderline
ONIVA01G10320.2 Flavonoid IFS medium borderline