PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA08G15690.1 Alkaloid H6H low borderline
ONIVA08G15690.2 Alkaloid H6H low borderline
ONIVA08G15690.3 Alkaloid H6H low borderline
ONIVA08G15690.4 Alkaloid H6H low borderline
ONIVA08G15690.5 Alkaloid H6H low borderline
ONIVA09G02020.1 Alkaloid H6H low borderline
ONIVA09G02230.1 Alkaloid H6H low borderline
ONIVA09G02230.2 Alkaloid H6H low borderline
ONIVA09G12260.1 Alkaloid H6H low borderline
ONIVA09G12930.1 Alkaloid H6H medium borderline
ONIVA10G18700.1 Alkaloid H6H medium borderline
ONIVA10G20890.1 Alkaloid H6H medium borderline
ONIVA11G05770.2 Alkaloid H6H medium pass
ONIVA11G09150.1 Alkaloid H6H low borderline
ONIVA11G11680.1 Alkaloid H6H medium borderline
ONIVA01G10290.1 Alkaloid IO medium borderline
ONIVA01G10320.3 Alkaloid IO medium borderline
ONIVA01G31770.1 Alkaloid IO medium borderline
ONIVA01G31770.2 Alkaloid IO medium borderline
ONIVA01G39070.1 Alkaloid IO low borderline
ONIVA01G39070.2 Alkaloid IO low borderline
ONIVA01G40290.1 Alkaloid IO medium borderline
ONIVA01G51320.1 Alkaloid IO low borderline
ONIVA02G30540.1 Alkaloid IO low borderline
ONIVA03G28680.1 Alkaloid IO medium borderline
ONIVA03G36450.1 Alkaloid IO medium borderline
ONIVA04G09580.1 Alkaloid IO medium borderline
ONIVA05G00130.1 Alkaloid IO low borderline
ONIVA06G07760.1 Alkaloid IO high pass
ONIVA06G11840.1 Alkaloid IO medium borderline
ONIVA07G15000.1 Alkaloid IO low borderline
ONIVA07G19370.2 Alkaloid IO medium borderline
ONIVA08G01870.1 Alkaloid IO medium borderline
ONIVA08G08950.1 Alkaloid IO low borderline
ONIVA08G25690.1 Alkaloid IO medium borderline
ONIVA09G19940.1 Alkaloid IO medium borderline
ONIVA10G06470.1 Alkaloid IO medium borderline
ONIVA12G15520.1 Alkaloid IO medium borderline
ONIVA03G23470.1 Alkaloid ISY medium pass
ONIVA03G24110.1 Alkaloid ISY medium pass
ONIVA07G19930.1 Alkaloid ISY medium pass
ONIVA01G02650.1 Alkaloid LAMT medium borderline
ONIVA02G15620.1 Alkaloid LAMT medium borderline
ONIVA02G33210.1 Alkaloid LAMT medium borderline
ONIVA03G31740.1 Alkaloid LAMT medium pass
ONIVA03G31760.1 Alkaloid LAMT medium borderline
ONIVA04G07120.1 Alkaloid LAMT medium borderline
ONIVA04G27190.2 Alkaloid LAMT medium borderline
ONIVA04G27260.1 Alkaloid LAMT medium borderline
ONIVA06G10200.1 Alkaloid LAMT medium borderline