PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA06G14100.1 Alkaloid LAMT medium borderline
ONIVA06G14130.1 Alkaloid LAMT medium borderline
ONIVA06G15600.1 Alkaloid LAMT medium borderline
ONIVA06G15600.2 Alkaloid LAMT medium borderline
ONIVA11G08820.1 Alkaloid LAMT medium borderline
ONIVA11G08840.1 Alkaloid LAMT medium borderline
ONIVA11G08870.1 Alkaloid LAMT medium borderline
ONIVA02G25170.1 Alkaloid MPO medium pass
ONIVA03G25160.1 Alkaloid MPO medium pass
ONIVA03G25170.1 Alkaloid MPO high pass
ONIVA04G01190.1 Alkaloid MPO medium pass
ONIVA04G03990.1 Alkaloid MPO medium pass
ONIVA04G14150.1 Alkaloid MPO high pass
ONIVA07G17740.1 Alkaloid MPO medium pass
ONIVA07G17740.2 Alkaloid MPO high pass
ONIVA01G06520.1 Alkaloid NCS medium borderline
ONIVA01G06520.2 Alkaloid NCS medium borderline
ONIVA01G17320.1 Alkaloid NCS medium borderline
ONIVA01G17330.1 Alkaloid NCS medium borderline
ONIVA02G19510.1 Alkaloid NCS medium borderline
ONIVA02G19510.2 Alkaloid NCS medium borderline
ONIVA02G19530.1 Alkaloid NCS medium borderline
ONIVA04G14110.1 Alkaloid NCS medium borderline
ONIVA04G17340.1 Alkaloid NCS medium borderline
ONIVA04G19810.1 Alkaloid NCS medium pass
ONIVA04G21960.1 Alkaloid NCS medium borderline
ONIVA04G21960.3 Alkaloid NCS medium borderline
ONIVA08G06680.1 Alkaloid NCS medium borderline
ONIVA09G05380.1 Alkaloid NCS low borderline
ONIVA09G06130.1 Alkaloid NCS medium borderline
ONIVA09G06160.1 Alkaloid NCS medium borderline
ONIVA09G06160.2 Alkaloid NCS medium borderline
ONIVA09G12860.1 Alkaloid NCS medium borderline
ONIVA10G18130.1 Alkaloid NCS medium borderline
ONIVA10G18130.2 Alkaloid NCS medium borderline
ONIVA10G20820.1 Alkaloid NCS medium borderline
ONIVA10G20830.1 Alkaloid NCS medium borderline
ONIVA10G20830.2 Alkaloid NCS medium borderline
ONIVA10G20860.1 Alkaloid NCS medium borderline
ONIVA11G05770.1 Alkaloid NCS medium borderline
ONIVA11G05770.3 Alkaloid NCS medium borderline
ONIVA01G06160.1 Alkaloid NMT low borderline
ONIVA01G09570.1 Alkaloid NMT low borderline
ONIVA01G28340.1 Alkaloid NMT low borderline
ONIVA01G28340.2 Alkaloid NMT low borderline
ONIVA01G31440.1 Alkaloid NMT medium borderline
ONIVA01G31750.1 Alkaloid NMT medium borderline
ONIVA01G31780.1 Alkaloid NMT medium borderline
ONIVA01G33480.1 Alkaloid NMT medium pass
ONIVA01G39640.1 Alkaloid NMT medium pass