PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA01G21290.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA01G21290.2 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA01G50580.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA01G50580.2 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G07430.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G07450.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G07470.3 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G07470.4 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G07990.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G16080.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA02G19110.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA03G25250.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA03G27300.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA04G18400.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA05G17260.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA05G20500.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA05G23620.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA06G12760.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA06G13170.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA06G18770.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA06G26330.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA06G30530.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA08G00390.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA08G00410.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA08G01870.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA10G03020.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA10G04030.2 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA10G06470.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA10G10510.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA11G03030.2 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA11G11190.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA11G14750.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA11G14750.2 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA11G20640.1 Phenylpropanoid F5H/CYP84A medium borderline
ONIVA01G00310.1 Phenylpropanoid HCT medium pass
ONIVA01G05770.1 Phenylpropanoid HCT low borderline
ONIVA01G14330.1 Phenylpropanoid HCT low borderline
ONIVA01G18240.1 Phenylpropanoid HCT medium pass
ONIVA01G21300.1 Phenylpropanoid HCT low borderline
ONIVA01G25860.1 Phenylpropanoid HCT low borderline
ONIVA01G25870.1 Phenylpropanoid HCT low borderline
ONIVA01G48420.1 Phenylpropanoid HCT low borderline
ONIVA02G00080.1 Phenylpropanoid HCT low borderline
ONIVA02G26710.1 Phenylpropanoid HCT medium pass
ONIVA04G02430.1 Phenylpropanoid HCT low borderline
ONIVA04G16010.1 Phenylpropanoid HCT medium pass
ONIVA04G16020.1 Phenylpropanoid HCT medium pass
ONIVA04G23950.1 Phenylpropanoid HCT low borderline
ONIVA05G01250.1 Phenylpropanoid HCT low borderline
ONIVA05G02690.1 Phenylpropanoid HCT low borderline