PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA10G17760.1 Flavonoid UFGT high pass
ONIVA11G11740.1 Flavonoid UFGT high pass
ONIVA11G11850.1 Flavonoid UFGT medium pass
ONIVA11G11920.1 Flavonoid UFGT high pass
ONIVA11G12360.1 Flavonoid UFGT medium pass
ONIVA11G12470.1 Flavonoid UFGT low borderline
ONIVA11G12480.1 Flavonoid UFGT high pass
ONIVA11G18630.1 Flavonoid UFGT medium pass
ONIVA11G21450.1 Flavonoid UFGT medium pass
ONIVA12G12170.1 Flavonoid UFGT low borderline
ONIVA12G14570.1 Flavonoid UFGT medium pass
ONIVA12G15260.2 Flavonoid UFGT low borderline
ONIVA12G15880.1 Flavonoid UFGT high pass
ONIVA12G17550.1 Flavonoid UFGT medium pass
ONIVA12G18430.1 Flavonoid UFGT high pass
ONIVA12G18720.1 Flavonoid UFGT high pass