PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA01G26470.2 Alkaloid SLS medium borderline
ONIVA01G33910.1 Alkaloid SLS medium borderline
ONIVA02G05880.1 Alkaloid SLS medium borderline
ONIVA02G07500.1 Alkaloid SLS medium borderline
ONIVA02G07500.2 Alkaloid SLS medium borderline
ONIVA02G07520.1 Alkaloid SLS medium borderline
ONIVA02G09550.1 Alkaloid SLS medium borderline
ONIVA02G25670.1 Alkaloid SLS medium borderline
ONIVA02G26590.1 Alkaloid SLS low borderline
ONIVA02G26590.2 Alkaloid SLS low borderline
ONIVA02G40680.1 Alkaloid SLS medium borderline
ONIVA04G05480.1 Alkaloid SLS medium borderline
ONIVA04G20950.1 Alkaloid SLS medium borderline
ONIVA04G28680.1 Alkaloid SLS medium borderline
ONIVA04G28730.1 Alkaloid SLS medium borderline
ONIVA04G28740.1 Alkaloid SLS medium borderline
ONIVA05G16620.1 Alkaloid SLS medium borderline
ONIVA05G16630.1 Alkaloid SLS medium borderline
ONIVA06G02150.1 Alkaloid SLS medium borderline
ONIVA06G02150.2 Alkaloid SLS medium borderline
ONIVA06G06670.1 Alkaloid SLS medium pass
ONIVA06G06820.1 Alkaloid SLS medium borderline
ONIVA06G06830.1 Alkaloid SLS medium borderline
ONIVA06G23690.1 Alkaloid SLS medium borderline
ONIVA07G09740.1 Alkaloid SLS medium borderline
ONIVA07G13050.1 Alkaloid SLS medium borderline
ONIVA08G16570.1 Alkaloid SLS medium borderline
ONIVA09G09320.1 Alkaloid SLS medium borderline
ONIVA10G19870.1 Alkaloid SLS medium borderline
ONIVA10G19870.3 Alkaloid SLS medium borderline
ONIVA10G19870.5 Alkaloid SLS medium borderline
ONIVA12G02660.1 Alkaloid SLS medium borderline
ONIVA12G10660.1 Alkaloid SLS medium borderline
ONIVA01G01610.1 Alkaloid STR low borderline
ONIVA01G05690.1 Alkaloid STR low borderline
ONIVA01G05690.2 Alkaloid STR low borderline
ONIVA01G05690.3 Alkaloid STR low borderline
ONIVA01G19690.1 Alkaloid STR low borderline
ONIVA01G25440.1 Alkaloid STR low borderline
ONIVA01G25440.2 Alkaloid STR low borderline
ONIVA01G25880.1 Alkaloid STR low borderline
ONIVA01G31640.1 Alkaloid STR medium pass
ONIVA01G33640.1 Alkaloid STR low borderline
ONIVA01G41410.1 Alkaloid STR medium pass
ONIVA02G07950.1 Alkaloid STR low borderline
ONIVA02G07950.2 Alkaloid STR low borderline
ONIVA02G07950.3 Alkaloid STR low borderline
ONIVA02G15380.1 Alkaloid STR low borderline
ONIVA02G20940.1 Alkaloid STR low borderline
ONIVA03G04050.1 Alkaloid STR low borderline