Oryza nivara (oryza_nivara)
Imported from atlas release summary for Oryza nivara.
2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5100
Family-Level Calls
BAHD
6.27%
C4H
6.1%
C3'H/CYP98A
5.9%
UGT
4.33%
UFGT
4.1%
7DLGT
4.08%
T3O
3.65%
CYP76
3.16%
Other Families
62.41%
More Families (98)
IFS
158
3.1%
4CL
150
2.94%
F3'H/CYP75B
136
2.67%
POD
131
2.57%
BR6OX2/CYP85A2
116
2.27%
DWF4/CYP90B1
111
2.18%
NMT
100
1.96%
STR
99
1.94%
F3H
99
1.94%
CYP71
96
1.88%
CAD
86
1.69%
SMT1/SMT2/SMT3
82
1.61%
CAS
82
1.61%
TPS
77
1.51%
GES
67
1.31%
SGD
57
1.12%
TRI/TRII
54
1.06%
PYKS
53
1.04%
IFR
50
0.98%
CODM/T6ODM
48
0.94%
H6H
48
0.94%
T16H
46
0.9%
G8O/G8H
46
0.9%
COMT
44
0.86%
CSE
43
0.84%
CCR
43
0.84%
LAC
42
0.82%
RAS
41
0.8%
SLS
40
0.78%
HCT
40
0.78%
PMT
39
0.76%
GS
37
0.73%
F5H/CYP84A
37
0.73%
16OMT
36
0.71%
F3'5'H/CYP75A
36
0.71%
ANR
36
0.71%
FNS
35
0.69%
CYP90D1
35
0.69%
CYP51G1
34
0.67%
PAL
33
0.65%
CHS
31
0.61%
DFR
31
0.61%
BR6OX1/CYP85A1
29
0.57%
NCS
26
0.51%
IO
23
0.45%
8HGO
23
0.45%
CPD/CYP90A1
23
0.45%
CNMT
21
0.41%
BBE
19
0.37%
7DLH
17
0.33%
LAMT
16
0.31%
COR
16
0.31%
MVK
15
0.29%
ANS/LDOX
14
0.27%
TAT
14
0.27%
ROT3/CYP90C1
13
0.25%
FPPS
12
0.24%
CCoAOMT
11
0.22%
CPR
11
0.22%
GGPPS
11
0.22%
CYP80B1
10
0.2%
XMT_MXMT_DXMT
10
0.2%
SQS/FDFT1
10
0.2%
CHI
9
0.18%
AACT
9
0.18%
MPO
8
0.16%
FK
8
0.16%
CYP80F1
7
0.14%
HPPR
7
0.14%
HMGR
7
0.14%
TYDC_DDC
6
0.12%
ADC
6
0.12%
SMO1/SMO2
6
0.12%
CYP719
5
0.1%
TDC
4
0.08%
DET2
4
0.08%
MCT/IspD
4
0.08%
DXS
4
0.08%
ODC
3
0.06%
ISY
3
0.06%
FLS
3
0.06%
HYD1
3
0.06%
DWF1
3
0.06%
PMK
3
0.06%
HMGS
3
0.06%
SQE
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
MVD
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 573 | 19 | BAHD (237) | View species results |
| Alkaloid pathway | 445 | 24 | 7DLGT (78) | View species results |
| Phenylpropanoid pathway | 308 | 12 | POD (101) | View species results |
| Flavonoid pathway | 306 | 13 | UFGT (191) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (77) | View species results |
| Steroid pathway | 137 | 13 | SMT1/SMT2/SMT3 (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1977 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 401 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ONIVA03G12710.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA03G14120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA03G14140.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA03G21610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA03G35830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA04G02890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA04G19310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA04G22960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA04G22960.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G01440.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G01460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G03090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G03090.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G08300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G11200.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA05G14820.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G15290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G26400.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA05G29220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA06G19120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA06G21710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA06G24320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA06G25250.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA06G25260.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA06G31460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA06G31460.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G01930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G01930.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G01930.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G01930.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G02040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G02040.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G04830.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G14920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G16000.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA07G16010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA07G22180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA07G22180.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G04090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G04430.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA08G10160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G10160.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G10160.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G13840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G17800.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ONIVA08G25420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G25420.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA08G25420.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA09G01440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ONIVA09G02340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |