PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA09G05330.1 Alkaloid STR low borderline
ONIVA09G05370.1 Alkaloid STR low borderline
ONIVA09G07290.1 Alkaloid STR low borderline
ONIVA09G07290.2 Alkaloid STR low borderline
ONIVA09G07330.1 Alkaloid STR medium pass
ONIVA09G08590.1 Alkaloid STR medium pass
ONIVA09G14150.1 Alkaloid STR low borderline
ONIVA09G14160.1 Alkaloid STR low borderline
ONIVA10G03620.1 Alkaloid STR low borderline
ONIVA10G04800.1 Alkaloid STR low borderline
ONIVA10G04800.2 Alkaloid STR low borderline
ONIVA10G04800.3 Alkaloid STR low borderline
ONIVA10G04800.4 Alkaloid STR low borderline
ONIVA10G10690.1 Alkaloid STR low borderline
ONIVA10G11730.1 Alkaloid STR low borderline
ONIVA10G11730.2 Alkaloid STR low borderline
ONIVA10G16210.1 Alkaloid STR low borderline
ONIVA11G04730.1 Alkaloid STR low borderline
ONIVA11G18060.1 Alkaloid STR low borderline
ONIVA11G18060.2 Alkaloid STR low borderline
ONIVA11G18060.3 Alkaloid STR low borderline
ONIVA12G01760.1 Alkaloid STR low borderline
ONIVA12G01760.2 Alkaloid STR low borderline
ONIVA12G01790.1 Alkaloid STR medium pass
ONIVA12G01790.2 Alkaloid STR medium pass
ONIVA12G01790.3 Alkaloid STR medium pass
ONIVA12G01920.1 Alkaloid STR low borderline
ONIVA12G01930.1 Alkaloid STR medium pass
ONIVA12G06980.1 Alkaloid STR low borderline
ONIVA12G09840.1 Alkaloid STR low borderline
ONIVA12G09840.2 Alkaloid STR low borderline
ONIVA12G09840.3 Alkaloid STR low borderline
ONIVA01G00020.1 Alkaloid T16H medium borderline
ONIVA01G00060.1 Alkaloid T16H medium borderline
ONIVA01G39050.1 Alkaloid T16H low borderline
ONIVA02G03550.1 Alkaloid T16H low borderline
ONIVA02G07430.1 Alkaloid T16H medium borderline
ONIVA02G07450.1 Alkaloid T16H medium borderline
ONIVA02G07470.1 Alkaloid T16H medium borderline
ONIVA02G07470.2 Alkaloid T16H medium borderline
ONIVA02G07470.3 Alkaloid T16H medium borderline
ONIVA02G07990.1 Alkaloid T16H medium borderline
ONIVA02G14400.1 Alkaloid T16H medium borderline
ONIVA02G16080.1 Alkaloid T16H medium borderline
ONIVA02G26660.1 Alkaloid T16H low borderline
ONIVA02G26660.2 Alkaloid T16H low borderline
ONIVA02G26660.3 Alkaloid T16H low borderline
ONIVA03G19440.1 Alkaloid T16H medium borderline
ONIVA03G20740.1 Alkaloid T16H medium borderline
ONIVA03G23190.1 Alkaloid T16H medium borderline