PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA03G36450.3 Alkaloid T16H medium borderline
ONIVA04G14400.3 Alkaloid T16H medium borderline
ONIVA04G20730.1 Alkaloid T16H medium borderline
ONIVA05G03810.1 Alkaloid T16H medium borderline
ONIVA05G14050.1 Alkaloid T16H medium borderline
ONIVA05G17250.1 Alkaloid T16H medium borderline
ONIVA05G17260.1 Alkaloid T16H medium borderline
ONIVA06G12760.1 Alkaloid T16H medium borderline
ONIVA06G22560.1 Alkaloid T16H low borderline
ONIVA06G25670.1 Alkaloid T16H low borderline
ONIVA06G26290.1 Alkaloid T16H medium borderline
ONIVA06G26330.1 Alkaloid T16H medium borderline
ONIVA06G26340.1 Alkaloid T16H medium borderline
ONIVA07G12890.1 Alkaloid T16H medium borderline
ONIVA08G00400.1 Alkaloid T16H medium borderline
ONIVA08G00410.1 Alkaloid T16H medium borderline
ONIVA08G14240.1 Alkaloid T16H medium borderline
ONIVA08G19890.1 Alkaloid T16H medium borderline
ONIVA09G19950.1 Alkaloid T16H medium borderline
ONIVA10G03020.1 Alkaloid T16H medium borderline
ONIVA10G05010.1 Alkaloid T16H medium borderline
ONIVA10G17160.1 Alkaloid T16H medium borderline
ONIVA10G17160.2 Alkaloid T16H medium borderline
ONIVA11G09850.1 Alkaloid T16H medium borderline
ONIVA11G11140.1 Alkaloid T16H medium borderline
ONIVA11G14750.1 Alkaloid T16H medium borderline
ONIVA11G14750.2 Alkaloid T16H medium borderline
ONIVA11G20640.1 Alkaloid T16H medium borderline
ONIVA01G00010.1 Alkaloid T3O medium borderline
ONIVA01G00010.2 Alkaloid T3O medium borderline
ONIVA01G00050.1 Alkaloid T3O medium borderline
ONIVA01G00070.1 Alkaloid T3O medium borderline
ONIVA01G06140.1 Alkaloid T3O medium pass
ONIVA01G07210.1 Alkaloid T3O medium pass
ONIVA01G07210.2 Alkaloid T3O medium pass
ONIVA01G07210.3 Alkaloid T3O medium pass
ONIVA01G09140.1 Alkaloid T3O medium pass
ONIVA01G09150.1 Alkaloid T3O medium pass
ONIVA01G10310.1 Alkaloid T3O medium borderline
ONIVA01G10320.1 Alkaloid T3O medium borderline
ONIVA01G10320.2 Alkaloid T3O medium borderline
ONIVA01G10500.1 Alkaloid T3O medium pass
ONIVA01G10590.1 Alkaloid T3O medium borderline
ONIVA01G14620.1 Alkaloid T3O low borderline
ONIVA01G18080.1 Alkaloid T3O medium borderline
ONIVA01G18920.1 Alkaloid T3O low borderline
ONIVA01G21290.1 Alkaloid T3O medium borderline
ONIVA01G21290.2 Alkaloid T3O medium borderline
ONIVA01G21800.1 Alkaloid T3O medium borderline
ONIVA01G31760.1 Alkaloid T3O high pass