PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA11G02720.1 Alkaloid T3O low borderline
ONIVA11G03030.1 Alkaloid T3O medium borderline
ONIVA11G03030.2 Alkaloid T3O medium pass
ONIVA11G04800.1 Alkaloid T3O medium borderline
ONIVA11G11160.1 Alkaloid T3O medium borderline
ONIVA11G11190.1 Alkaloid T3O medium borderline
ONIVA11G20640.2 Alkaloid T3O medium borderline
ONIVA11G20640.3 Alkaloid T3O medium borderline
ONIVA12G00890.1 Alkaloid T3O medium pass
ONIVA12G01510.1 Alkaloid T3O medium pass
ONIVA12G01820.1 Alkaloid T3O medium pass
ONIVA12G01960.1 Alkaloid T3O medium pass
ONIVA12G08550.1 Alkaloid T3O low borderline
ONIVA12G18900.1 Alkaloid T3O medium borderline
ONIVA05G19450.1 Alkaloid TDC low borderline
ONIVA07G07140.1 Alkaloid TDC low borderline
ONIVA09G11770.1 Alkaloid TDC medium borderline
ONIVA10G00630.1 Alkaloid TDC low borderline
ONIVA01G21350.1 Alkaloid TRI/TRII medium pass
ONIVA01G48840.1 Alkaloid TRI/TRII medium pass
ONIVA01G48850.1 Alkaloid TRI/TRII medium pass
ONIVA02G19080.1 Alkaloid TRI/TRII medium pass
ONIVA02G27980.1 Alkaloid TRI/TRII low borderline
ONIVA02G38830.1 Alkaloid TRI/TRII medium pass
ONIVA03G13190.1 Alkaloid TRI/TRII medium pass
ONIVA03G13210.1 Alkaloid TRI/TRII medium pass
ONIVA03G13760.1 Alkaloid TRI/TRII medium pass
ONIVA03G13760.2 Alkaloid TRI/TRII medium pass
ONIVA03G20560.1 Alkaloid TRI/TRII medium borderline
ONIVA03G20560.2 Alkaloid TRI/TRII low borderline
ONIVA03G20560.3 Alkaloid TRI/TRII medium borderline
ONIVA03G25750.1 Alkaloid TRI/TRII low borderline
ONIVA03G28960.1 Alkaloid TRI/TRII low borderline
ONIVA03G35440.1 Alkaloid TRI/TRII low borderline
ONIVA03G40040.1 Alkaloid TRI/TRII medium pass
ONIVA03G41800.1 Alkaloid TRI/TRII medium pass
ONIVA04G02380.1 Alkaloid TRI/TRII medium pass
ONIVA04G03980.1 Alkaloid TRI/TRII medium pass
ONIVA04G09460.1 Alkaloid TRI/TRII medium pass
ONIVA04G12830.1 Alkaloid TRI/TRII low borderline
ONIVA04G17890.1 Alkaloid TRI/TRII low borderline
ONIVA04G17890.2 Alkaloid TRI/TRII low borderline
ONIVA05G02630.1 Alkaloid TRI/TRII low borderline
ONIVA06G12080.1 Alkaloid TRI/TRII medium pass
ONIVA06G15140.1 Alkaloid TRI/TRII medium pass
ONIVA07G17020.1 Alkaloid TRI/TRII low borderline
ONIVA07G19290.1 Alkaloid TRI/TRII medium pass
ONIVA07G25090.1 Alkaloid TRI/TRII low borderline
ONIVA07G25090.2 Alkaloid TRI/TRII low borderline
ONIVA07G25090.3 Alkaloid TRI/TRII low borderline