PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA07G25090.4 Alkaloid TRI/TRII medium pass
ONIVA07G26970.1 Alkaloid TRI/TRII medium pass
ONIVA09G01550.1 Alkaloid TRI/TRII medium pass
ONIVA09G08690.1 Alkaloid TRI/TRII medium pass
ONIVA10G11400.1 Alkaloid TRI/TRII medium pass
ONIVA10G17050.1 Alkaloid TRI/TRII medium pass
ONIVA10G17050.3 Alkaloid TRI/TRII medium pass
ONIVA10G17060.1 Alkaloid TRI/TRII medium pass
ONIVA10G17070.1 Alkaloid TRI/TRII medium pass
ONIVA10G17100.1 Alkaloid TRI/TRII medium pass
ONIVA10G17120.1 Alkaloid TRI/TRII medium pass
ONIVA10G17130.1 Alkaloid TRI/TRII low borderline
ONIVA11G09110.1 Alkaloid TRI/TRII low borderline
ONIVA11G09110.2 Alkaloid TRI/TRII low borderline
ONIVA11G11700.1 Alkaloid TRI/TRII medium pass
ONIVA11G11720.1 Alkaloid TRI/TRII medium pass
ONIVA11G11770.1 Alkaloid TRI/TRII medium pass
ONIVA11G11770.2 Alkaloid TRI/TRII medium pass
ONIVA11G11810.1 Alkaloid TRI/TRII medium pass
ONIVA11G22090.1 Alkaloid TRI/TRII medium pass
ONIVA12G10440.1 Alkaloid TRI/TRII medium pass
ONIVA12G10830.1 Alkaloid TRI/TRII medium pass
ONIVA01G36730.1 Alkaloid TYDC_DDC medium borderline
ONIVA07G08980.1 Alkaloid TYDC_DDC low borderline
ONIVA07G10100.1 Alkaloid TYDC_DDC medium borderline
ONIVA09G11790.1 Alkaloid TYDC_DDC medium borderline
ONIVA10G07900.1 Alkaloid TYDC_DDC medium borderline
ONIVA10G08770.1 Alkaloid TYDC_DDC medium borderline
ONIVA04G07120.2 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA04G27190.1 Alkaloid XMT_MXMT_DXMT low borderline
ONIVA04G27280.1 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA05G00140.1 Alkaloid XMT_MXMT_DXMT low borderline
ONIVA06G10240.1 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA06G14140.1 Alkaloid XMT_MXMT_DXMT low borderline
ONIVA06G14140.2 Alkaloid XMT_MXMT_DXMT low borderline
ONIVA06G14270.1 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA06G14330.1 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA11G08830.1 Alkaloid XMT_MXMT_DXMT medium borderline
ONIVA01G26890.1 Flavonoid 4CL low borderline
ONIVA01G28390.1 Flavonoid 4CL low borderline
ONIVA01G30470.1 Flavonoid 4CL low borderline
ONIVA01G36120.1 Flavonoid 4CL low borderline
ONIVA01G36120.2 Flavonoid 4CL low borderline
ONIVA01G45790.1 Flavonoid 4CL low borderline
ONIVA01G45790.2 Flavonoid 4CL low borderline
ONIVA01G45790.3 Flavonoid 4CL medium pass
ONIVA01G45790.4 Flavonoid 4CL medium pass
ONIVA02G01310.1 Flavonoid 4CL medium pass
ONIVA02G06840.1 Flavonoid 4CL medium pass
ONIVA02G20770.1 Flavonoid 4CL low borderline