PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
ONIVA03G31710.1 Alkaloid 7DLGT medium pass
ONIVA03G32330.1 Alkaloid 7DLGT low borderline
ONIVA03G32340.1 Alkaloid 7DLGT low borderline
ONIVA03G35160.1 Alkaloid 7DLGT low borderline
ONIVA03G36220.1 Alkaloid 7DLGT low borderline
ONIVA03G36240.1 Alkaloid 7DLGT low borderline
ONIVA03G36250.1 Alkaloid 7DLGT low borderline
ONIVA03G36280.1 Alkaloid 7DLGT medium pass
ONIVA03G36280.2 Alkaloid 7DLGT medium pass
ONIVA03G39400.1 Alkaloid 7DLGT low borderline
ONIVA03G39850.1 Alkaloid 7DLGT low borderline
ONIVA03G41180.1 Alkaloid 7DLGT medium pass
ONIVA03G42210.1 Alkaloid 7DLGT low borderline
ONIVA03G42350.1 Alkaloid 7DLGT low borderline
ONIVA04G04070.1 Alkaloid 7DLGT low borderline
ONIVA04G04210.1 Alkaloid 7DLGT low borderline
ONIVA04G04240.1 Alkaloid 7DLGT low borderline
ONIVA04G04260.1 Alkaloid 7DLGT low borderline
ONIVA04G04310.1 Alkaloid 7DLGT low borderline
ONIVA04G04890.1 Alkaloid 7DLGT low borderline
ONIVA04G04900.1 Alkaloid 7DLGT low borderline
ONIVA04G05330.1 Alkaloid 7DLGT low borderline
ONIVA04G05900.1 Alkaloid 7DLGT medium pass
ONIVA04G05910.1 Alkaloid 7DLGT medium pass
ONIVA04G06330.1 Alkaloid 7DLGT medium pass
ONIVA04G12630.2 Alkaloid 7DLGT medium pass
ONIVA04G16380.1 Alkaloid 7DLGT low borderline
ONIVA04G17420.1 Alkaloid 7DLGT low borderline
ONIVA04G17430.1 Alkaloid 7DLGT low borderline
ONIVA04G17500.1 Alkaloid 7DLGT low borderline
ONIVA04G17500.2 Alkaloid 7DLGT low borderline
ONIVA04G19580.1 Alkaloid 7DLGT low borderline
ONIVA04G19590.1 Alkaloid 7DLGT medium pass
ONIVA04G19600.1 Alkaloid 7DLGT low borderline
ONIVA04G20360.1 Alkaloid 7DLGT medium pass
ONIVA04G20390.1 Alkaloid 7DLGT medium pass
ONIVA04G26020.1 Alkaloid 7DLGT low borderline
ONIVA05G05550.1 Alkaloid 7DLGT low borderline
ONIVA05G05570.1 Alkaloid 7DLGT low borderline
ONIVA05G05800.1 Alkaloid 7DLGT low borderline
ONIVA05G18280.1 Alkaloid 7DLGT low borderline
ONIVA05G22000.1 Alkaloid 7DLGT medium pass
ONIVA05G22440.1 Alkaloid 7DLGT low borderline
ONIVA05G22460.1 Alkaloid 7DLGT low borderline
ONIVA05G22470.1 Alkaloid 7DLGT medium pass
ONIVA05G24100.1 Alkaloid 7DLGT medium pass
ONIVA05G24120.1 Alkaloid 7DLGT medium pass
ONIVA05G24130.1 Alkaloid 7DLGT medium pass
ONIVA05G24140.1 Alkaloid 7DLGT medium pass
ONIVA05G26250.1 Alkaloid 7DLGT low borderline