PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
ONIVA02G07500.2 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G07520.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G08090.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G08130.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G08140.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G09550.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G14400.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G15760.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G19050.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G19050.3 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G19050.4 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G19110.2 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G19110.3 Phenylpropanoid C3'H/CYP98A medium pass
ONIVA02G21000.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23330.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23370.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23400.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23420.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23430.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G23540.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA02G25440.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G25670.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G25970.1 Phenylpropanoid C3'H/CYP98A high pass
ONIVA02G29610.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G30540.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G32100.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G39360.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G40150.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G40150.2 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G40150.3 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA02G40680.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G01130.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G02330.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G02770.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G02890.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G02980.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G03000.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G04920.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G11140.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G11150.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G11230.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G17150.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G17150.2 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G19440.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G20740.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G23190.1 Phenylpropanoid C3'H/CYP98A medium pass
ONIVA03G23930.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G24970.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA03G26540.1 Phenylpropanoid C3'H/CYP98A low borderline
ONIVA03G26570.1 Phenylpropanoid C3'H/CYP98A medium pass