PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
ONIVA05G14660.1 Alkaloid 7DLH medium borderline
ONIVA07G13050.2 Alkaloid 7DLH medium borderline
ONIVA07G24010.1 Alkaloid 7DLH low borderline
ONIVA10G19870.2 Alkaloid 7DLH medium borderline
ONIVA10G19870.4 Alkaloid 7DLH medium borderline
ONIVA10G19870.6 Alkaloid 7DLH medium borderline
ONIVA11G01290.2 Alkaloid 7DLH medium borderline
ONIVA11G02550.1 Alkaloid 7DLH medium borderline
ONIVA11G02550.2 Alkaloid 7DLH medium borderline
ONIVA11G02550.3 Alkaloid 7DLH medium borderline
ONIVA11G02730.1 Alkaloid 7DLH medium borderline
ONIVA11G05040.1 Alkaloid 7DLH low borderline
ONIVA02G06300.1 Alkaloid 8HGO medium borderline
ONIVA02G06300.2 Alkaloid 8HGO medium borderline
ONIVA02G06310.1 Alkaloid 8HGO medium pass
ONIVA02G27760.1 Alkaloid 8HGO medium borderline
ONIVA02G27760.3 Alkaloid 8HGO medium borderline
ONIVA02G39890.1 Alkaloid 8HGO medium borderline
ONIVA03G09180.1 Alkaloid 8HGO low borderline
ONIVA03G12940.1 Alkaloid 8HGO low borderline
ONIVA04G13700.1 Alkaloid 8HGO low borderline
ONIVA04G21730.2 Alkaloid 8HGO low borderline
ONIVA04G21730.3 Alkaloid 8HGO low borderline
ONIVA05G11550.1 Alkaloid 8HGO medium borderline
ONIVA05G11550.2 Alkaloid 8HGO medium borderline
ONIVA05G11600.1 Alkaloid 8HGO medium borderline
ONIVA05G11600.2 Alkaloid 8HGO medium borderline
ONIVA05G11600.3 Alkaloid 8HGO medium borderline
ONIVA05G11600.4 Alkaloid 8HGO medium borderline
ONIVA05G11610.1 Alkaloid 8HGO medium borderline
ONIVA07G15700.1 Alkaloid 8HGO low borderline
ONIVA07G15750.1 Alkaloid 8HGO low borderline
ONIVA07G22030.1 Alkaloid 8HGO medium borderline
ONIVA07G22040.1 Alkaloid 8HGO medium borderline
ONIVA10G03100.1 Alkaloid 8HGO medium borderline
ONIVA03G27630.1 Alkaloid ADC low borderline
ONIVA04G00330.1 Alkaloid ADC medium pass
ONIVA06G02270.1 Alkaloid ADC medium pass
ONIVA07G05730.1 Alkaloid ADC low borderline
ONIVA08G16770.1 Alkaloid ADC low borderline
ONIVA08G17930.1 Alkaloid ADC low borderline
ONIVA01G14090.1 Alkaloid BBE medium borderline
ONIVA01G25940.1 Alkaloid BBE low borderline
ONIVA01G37910.1 Alkaloid BBE low borderline
ONIVA02G11100.1 Alkaloid BBE medium borderline
ONIVA04G04940.1 Alkaloid BBE medium borderline
ONIVA04G21390.1 Alkaloid BBE medium borderline
ONIVA04G29030.1 Alkaloid BBE medium borderline
ONIVA05G10380.1 Alkaloid BBE low borderline
ONIVA05G10380.2 Alkaloid BBE low borderline