PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA03G01130.1 Terpenoid CYP76 medium borderline
ONIVA03G02330.1 Terpenoid CYP76 medium pass
ONIVA03G08250.1 Terpenoid CYP76 low borderline
ONIVA03G11140.1 Terpenoid CYP76 medium borderline
ONIVA03G11150.1 Terpenoid CYP76 medium borderline
ONIVA03G11230.1 Terpenoid CYP76 medium pass
ONIVA03G19440.1 Terpenoid CYP76 medium borderline
ONIVA03G23190.1 Terpenoid CYP76 medium pass
ONIVA03G23930.1 Terpenoid CYP76 medium borderline
ONIVA03G24960.1 Terpenoid CYP76 medium borderline
ONIVA03G25250.1 Terpenoid CYP76 medium pass
ONIVA03G26570.1 Terpenoid CYP76 low borderline
ONIVA03G28680.1 Terpenoid CYP76 medium borderline
ONIVA03G29230.1 Terpenoid CYP76 low borderline
ONIVA03G35580.1 Terpenoid CYP76 medium pass
ONIVA03G35600.1 Terpenoid CYP76 medium pass
ONIVA03G36450.1 Terpenoid CYP76 low borderline
ONIVA03G36450.2 Terpenoid CYP76 low borderline
ONIVA03G36450.3 Terpenoid CYP76 medium pass
ONIVA04G00050.1 Terpenoid CYP76 medium borderline
ONIVA04G01000.1 Terpenoid CYP76 low borderline
ONIVA04G01030.1 Terpenoid CYP76 low borderline
ONIVA04G02070.1 Terpenoid CYP76 low borderline
ONIVA04G02070.2 Terpenoid CYP76 low borderline
ONIVA04G02400.1 Terpenoid CYP76 low borderline
ONIVA04G05480.1 Terpenoid CYP76 low borderline
ONIVA04G09580.1 Terpenoid CYP76 low borderline
ONIVA04G14400.2 Terpenoid CYP76 medium borderline
ONIVA04G14400.3 Terpenoid CYP76 medium borderline
ONIVA04G14400.4 Terpenoid CYP76 medium borderline
ONIVA04G18400.1 Terpenoid CYP76 low borderline
ONIVA04G20730.1 Terpenoid CYP76 low borderline
ONIVA04G21710.1 Terpenoid CYP76 medium pass
ONIVA04G21770.1 Terpenoid CYP76 medium borderline
ONIVA04G27320.1 Terpenoid CYP76 low borderline
ONIVA05G03810.1 Terpenoid CYP76 medium pass
ONIVA05G12040.1 Terpenoid CYP76 medium pass
ONIVA05G14050.1 Terpenoid CYP76 medium borderline
ONIVA05G16620.1 Terpenoid CYP76 low borderline
ONIVA05G16630.1 Terpenoid CYP76 low borderline
ONIVA05G17250.1 Terpenoid CYP76 low borderline
ONIVA05G17260.1 Terpenoid CYP76 low borderline
ONIVA05G17270.1 Terpenoid CYP76 low borderline
ONIVA05G17840.1 Terpenoid CYP76 medium borderline
ONIVA05G22030.1 Terpenoid CYP76 medium borderline
ONIVA06G00090.1 Terpenoid CYP76 medium borderline
ONIVA06G07760.1 Terpenoid CYP76 medium borderline
ONIVA06G11840.1 Terpenoid CYP76 medium borderline
ONIVA06G11940.1 Terpenoid CYP76 medium pass
ONIVA06G12760.1 Terpenoid CYP76 low borderline