PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr03g01121.3 Alkaloid TRI/TRII medium pass
OoffiChr03g01121.4 Alkaloid TRI/TRII medium pass
OoffiChr03g01121.5 Alkaloid TRI/TRII medium pass
OoffiChr03g01298.1 Alkaloid TRI/TRII medium pass
OoffiChr03g02316.1 Alkaloid TRI/TRII low borderline
OoffiChr03g02316.2 Alkaloid TRI/TRII low borderline
OoffiChr03g02870.1 Alkaloid TRI/TRII medium pass
OoffiChr03g03408.1 Alkaloid TRI/TRII medium pass
OoffiChr04g00266.1 Alkaloid TRI/TRII medium pass
OoffiChr04g00580.1 Alkaloid TRI/TRII medium pass
OoffiChr04g00580.2 Alkaloid TRI/TRII medium pass
OoffiChr04g00939.1 Alkaloid TRI/TRII low borderline
OoffiChr04g01301.1 Alkaloid TRI/TRII low borderline
OoffiChr05g00248.1 Alkaloid TRI/TRII medium pass
OoffiChr06g00559.1 Alkaloid TRI/TRII low borderline
OoffiChr07g00374.1 Alkaloid TRI/TRII medium pass
OoffiChr07g00374.2 Alkaloid TRI/TRII medium pass
OoffiChr07g01951.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02393.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02394.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02394.2 Alkaloid TRI/TRII medium pass
OoffiChr07g02395.1 Alkaloid TRI/TRII low borderline
OoffiChr07g02397.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02398.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02399.1 Alkaloid TRI/TRII low borderline
OoffiChr07g02401.1 Alkaloid TRI/TRII low borderline
OoffiChr07g02403.1 Alkaloid TRI/TRII medium pass
OoffiChr07g02541.2 Alkaloid TRI/TRII low borderline
OoffiChr07g02590.1 Alkaloid TRI/TRII medium pass
OoffiChr09g00029.1 Alkaloid TRI/TRII medium pass
OoffiChr09g00982.2 Alkaloid TRI/TRII low borderline
OoffiChr10g00957.1 Alkaloid TRI/TRII medium pass
OoffiChr10g01485.1 Alkaloid TRI/TRII medium pass
OoffiChr11g00698.1 Alkaloid TRI/TRII low borderline
OoffiChr11g00954.1 Alkaloid TRI/TRII medium pass
OoffiChr11g01451.1 Alkaloid TRI/TRII medium pass
OoffiChr12g00740.1 Alkaloid TRI/TRII medium pass
OoffiChr12g00905.1 Alkaloid TRI/TRII medium pass
OoffiChr05g01857.1 Alkaloid TYDC_DDC medium borderline
OoffiChr08g00255.1 Alkaloid TYDC_DDC medium borderline
OoffiChr10g00278.1 Alkaloid TYDC_DDC medium borderline
OoffiChr06g00860.1 Alkaloid XMT_MXMT_DXMT low borderline
OoffiChr06g00864.1 Alkaloid XMT_MXMT_DXMT medium borderline
OoffiChr06g01147.1 Alkaloid XMT_MXMT_DXMT medium borderline
OoffiChr06g01148.1 Alkaloid XMT_MXMT_DXMT medium borderline
OoffiChr06g01152.1 Alkaloid XMT_MXMT_DXMT low borderline
OoffiChr06g01462.1 Alkaloid XMT_MXMT_DXMT medium borderline
OoffiChr11g00674.2 Alkaloid XMT_MXMT_DXMT medium borderline
OoffiChr01g01366.1 Flavonoid 4CL medium pass
OoffiChr01g02199.1 Flavonoid 4CL low borderline