PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
OoffiChr08g01433.1 Alkaloid 7DLGT low borderline
OoffiChr08g01434.1 Alkaloid 7DLGT high pass
OoffiChr08g01742.1 Alkaloid 7DLGT low borderline
OoffiChr09g00152.1 Alkaloid 7DLGT medium pass
OoffiChr09g00266.1 Alkaloid 7DLGT medium pass
OoffiChr09g00424.1 Alkaloid 7DLGT medium pass
OoffiChr09g00589.1 Alkaloid 7DLGT low borderline
OoffiChr09g01083.1 Alkaloid 7DLGT low borderline
OoffiChr09g01316.1 Alkaloid 7DLGT low borderline
OoffiChr09g01317.1 Alkaloid 7DLGT low borderline
OoffiChr10g00339.1 Alkaloid 7DLGT medium pass
OoffiChr10g00471.1 Alkaloid 7DLGT low borderline
OoffiChr10g00784.1 Alkaloid 7DLGT low borderline
OoffiChr10g00786.1 Alkaloid 7DLGT low borderline
OoffiChr11g00505.1 Alkaloid 7DLGT low borderline
OoffiChr11g00850.1 Alkaloid 7DLGT low borderline
OoffiChr11g01178.1 Alkaloid 7DLGT medium pass
OoffiChr12g00374.1 Alkaloid 7DLGT low borderline
OoffiChr12g01388.1 Alkaloid 7DLGT medium pass
OoffiChr01g02076.2 Alkaloid 7DLH medium borderline
OoffiChr01g02077.4 Alkaloid 7DLH medium borderline
OoffiChr01g02079.1 Alkaloid 7DLH medium borderline
OoffiChr04g01444.1 Alkaloid 7DLH medium borderline
OoffiChr05g01712.1 Alkaloid 7DLH medium borderline
OoffiChr07g00637.1 Alkaloid 7DLH low borderline
OoffiChr07g02291.1 Alkaloid 7DLH low borderline
OoffiChr09g00663.1 Alkaloid 7DLH medium borderline
OoffiChr11g00159.1 Alkaloid 7DLH medium borderline
OoffiChr11g00883.1 Alkaloid 7DLH low borderline
OoffiChr12g00118.1 Alkaloid 7DLH medium borderline
OoffiChr12g00221.1 Alkaloid 7DLH medium borderline
OoffiChr02g02246.3 Alkaloid 8HGO medium borderline
OoffiChr02g03229.1 Alkaloid 8HGO medium borderline
OoffiChr03g00618.1 Alkaloid 8HGO medium borderline
OoffiChr03g00618.2 Alkaloid 8HGO medium borderline
OoffiChr03g00619.1 Alkaloid 8HGO medium borderline
OoffiChr03g00807.1 Alkaloid 8HGO low borderline
OoffiChr05g00024.2 Alkaloid 8HGO low borderline
OoffiChr07g01669.1 Alkaloid 8HGO low borderline
OoffiChr07g01669.2 Alkaloid 8HGO low borderline
OoffiChr07g02118.1 Alkaloid 8HGO medium borderline
OoffiChr10g00249.1 Alkaloid 8HGO medium borderline
OoffiChr10g01294.1 Alkaloid 8HGO low borderline
OoffiChr11g00551.1 Alkaloid 8HGO medium borderline
OoffiChr11g00552.1 Alkaloid 8HGO medium borderline
OoffiChr11g00553.2 Alkaloid 8HGO low borderline
OoffiChr11g00553.3 Alkaloid 8HGO medium pass
OoffiChr03g00457.1 Alkaloid ADC low borderline
OoffiChr04g00035.1 Alkaloid ADC medium pass
OoffiChr06g00134.1 Alkaloid ADC medium pass