PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr06g01964.1 Phenylpropanoid F5H/CYP84A low borderline
OoffiChr06g01965.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr06g01965.2 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr06g02204.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr07g00984.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr09g00453.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr09g00454.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr09g01367.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr11g00870.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr11g00946.1 Phenylpropanoid F5H/CYP84A medium borderline
OoffiChr01g00016.1 Phenylpropanoid HCT medium pass
OoffiChr01g00547.1 Phenylpropanoid HCT low borderline
OoffiChr01g00592.1 Phenylpropanoid HCT low borderline
OoffiChr01g01179.1 Phenylpropanoid HCT low borderline
OoffiChr01g01184.1 Phenylpropanoid HCT low borderline
OoffiChr01g01389.1 Phenylpropanoid HCT medium pass
OoffiChr01g01403.1 Phenylpropanoid HCT medium pass
OoffiChr01g01998.1 Phenylpropanoid HCT low borderline
OoffiChr01g02905.1 Phenylpropanoid HCT medium pass
OoffiChr01g03811.1 Phenylpropanoid HCT low borderline
OoffiChr01g03811.2 Phenylpropanoid HCT low borderline
OoffiChr02g00011.1 Phenylpropanoid HCT low borderline
OoffiChr02g00011.2 Phenylpropanoid HCT low borderline
OoffiChr02g02109.1 Phenylpropanoid HCT medium pass
OoffiChr02g02109.2 Phenylpropanoid HCT medium pass
OoffiChr04g00227.1 Phenylpropanoid HCT low borderline
OoffiChr04g01137.1 Phenylpropanoid HCT medium pass
OoffiChr04g01177.1 Phenylpropanoid HCT medium pass
OoffiChr04g01740.1 Phenylpropanoid HCT low borderline
OoffiChr04g01742.1 Phenylpropanoid HCT low borderline
OoffiChr05g00116.1 Phenylpropanoid HCT medium pass
OoffiChr05g00249.1 Phenylpropanoid HCT low borderline
OoffiChr05g00472.1 Phenylpropanoid HCT low borderline
OoffiChr05g00815.1 Phenylpropanoid HCT low borderline
OoffiChr06g00343.1 Phenylpropanoid HCT low borderline
OoffiChr06g00534.1 Phenylpropanoid HCT medium pass
OoffiChr06g00557.1 Phenylpropanoid HCT medium pass
OoffiChr06g00558.1 Phenylpropanoid HCT medium pass
OoffiChr06g02312.1 Phenylpropanoid HCT low borderline
OoffiChr06g02405.1 Phenylpropanoid HCT medium pass
OoffiChr07g00737.1 Phenylpropanoid HCT medium pass
OoffiChr07g00928.1 Phenylpropanoid HCT medium pass
OoffiChr07g01742.1 Phenylpropanoid HCT low borderline
OoffiChr08g00561.1 Phenylpropanoid HCT medium pass
OoffiChr08g01505.2 Phenylpropanoid HCT low borderline
OoffiChr08g01746.1 Phenylpropanoid HCT low borderline
OoffiChr08g01746.2 Phenylpropanoid HCT medium pass
OoffiChr09g00759.1 Phenylpropanoid HCT medium pass
OoffiChr10g00023.1 Phenylpropanoid HCT low borderline
OoffiChr10g00398.1 Phenylpropanoid HCT low borderline