PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status Best Target
Pnig01G0000320 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig01G0004790 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig01G0007060 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig01G0008350 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig01G0020200 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig01G0026110 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig01G0026170 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig01G0031840 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig01G0032600 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig01G0034860 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig01G0035440 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig01G0035590 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig01G0035920 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig01G0036090 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig01G0037130 Flavonoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Pnig01G0039360 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pnig03G0000160 Flavonoid 4CL medium pass 4CL__00009__sp_Q67W82_4CL4_ORYSJ
Pnig03G0015850 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig03G0016060 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig03G0016360 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig03G0024150 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig03G0024530 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig03G0024540 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig04G0010850 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig04G0029560 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Pnig05G0010240 Flavonoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig05G0010250 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig05G0016890 Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Pnig06G0015080 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig06G0015090 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig06G0017310 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Pnig07G0005470 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig07G0009670 Flavonoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig07G0009700 Flavonoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig07G0016960 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig08G0006330 Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pnig08G0008110 Flavonoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Pnig08G0008180 Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pnig09G0012490 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig09G0014640 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig09G0014650 Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Pnig10G0002300 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig11G0019930 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig13G0016410 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig13G0016970 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig13G0019730 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pnig13G0019870 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig13G0024010 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pnig14G0014270 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pnig15G0006070 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH