PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status Best Target
Pnig15G0006090 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006100 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006110 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006370 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006380 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006390 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006400 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006410 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig16G0013410 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig16G0013420 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig17G0011760 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig19G0005610 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig19G0006080 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig20G0008670 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig20G0018900 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig20G0019240 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig21G0011880 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig21G0011890 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig21G0014560 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig21G0015370 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig24G0007540 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007720 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007830 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007840 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007950 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0008000 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig25G0002420 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig25G0002440 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig25G0003430 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig26G0000790 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig26G0002780 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig26G0003990 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig01G0022550 Flavonoid ANR medium borderline ANR__00001__sp_Q5FB34_ANRCS_VITVI
Pnig13G0007500 Flavonoid ANR medium borderline ANR__00001__sp_Q5FB34_ANRCS_VITVI
Pnig13G0007510 Flavonoid ANR medium borderline ANR__00001__sp_Q5FB34_ANRCS_VITVI
Pnig25G0004760 Flavonoid ANR medium borderline ANR__00003__sp_Q9SEV0_BAN_ARATH
Pnig01G0005180 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig01G0016840 Flavonoid ANS/LDOX low borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
Pnig01G0031400 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig01G0034830 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig01G0034840 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig01G0036410 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig02G0009440 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig02G0027870 Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig02G0038140 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig03G0003290 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig03G0003300 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Pnig03G0007120 Flavonoid ANS/LDOX medium pass ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
Pnig03G0007240 Flavonoid ANS/LDOX low borderline ANS_LDOX__00005__sp_Q96323_LDOX_ARATH
Pnig03G0018820 Flavonoid ANS/LDOX medium pass ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC