PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status Best Target
Pnig15G0006090 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006100 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006110 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006370 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006380 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006390 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006400 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig15G0006410 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig16G0013410 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig16G0013420 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig17G0011760 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig19G0005610 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig19G0006080 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig20G0008670 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig20G0018900 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig20G0019240 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig21G0011880 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig21G0011890 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig21G0014560 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig21G0015370 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pnig24G0007540 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007720 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007830 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007840 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0007950 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig24G0008000 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Pnig25G0002420 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig25G0002440 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig25G0003430 Rosmarinic Acid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pnig26G0000790 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig26G0002780 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pnig26G0003990 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Pnig01G0003120 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0003130 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0013080 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0013100 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0013850 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018760 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018770 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018790 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018920 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018940 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0018970 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0019160 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0019180 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0022670 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0022800 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0030250 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0031650 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0032850 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI