PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status Best Target
Pnig21G0006850 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig21G0006890 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig21G0006930 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig22G0007560 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig23G0005580 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig23G0011710 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig24G0003420 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig24G0003440 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig24G0003570 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig24G0004890 Rosmarinic Acid C4H low borderline C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig25G0015090 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
PnigPn350000180 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
PnigPn410000020 Rosmarinic Acid C4H medium pass C4H__00001__sp_Q94IP1_TCMO_SORBI
Pnig01G0000310 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
Pnig04G0005890 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig04G0005900 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig04G0009510 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig04G0009520 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig07G0019230 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig10G0014110 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Pnig11G0010900 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
Pnig11G0010920 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Pnig16G0006490 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
Pnig17G0018540 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Pnig21G0011850 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Pnig22G0005160 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig26G0005660 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig26G0005670 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig26G0005680 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig26G0005690 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Pnig04G0024420 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig09G0014860 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig09G0014870 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig09G0014880 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig13G0019370 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig25G0003200 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig25G0003240 Rosmarinic Acid HPPR low borderline HPPR__00001__sp_Q65CJ7_HPPR_PLESU
Pnig02G0007860 Rosmarinic Acid PAL medium pass PAL__00004__sp_P45725_PAL3_ARATH
Pnig02G0007870 Rosmarinic Acid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Pnig02G0007880 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Pnig02G0007890 Rosmarinic Acid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Pnig05G0002700 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Pnig07G0002210 Rosmarinic Acid PAL medium pass PAL__00005__sp_Q50EX7_PAL1_PETHY
Pnig08G0003890 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005640 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005670 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005700 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005740 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005770 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0006550 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR