PlantSME Plant secondary metabolism enzyme database

Silene latifolia (silene_latifolia)

Imported from atlas release summary for Silene latifolia.

1810
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 18 BAHD (209) View species results
Alkaloid pathway 408 22 7DLGT (78) View species results
Phenylpropanoid pathway 369 11 POD (160) View species results
Flavonoid pathway 250 11 UFGT (172) View species results
Rosmarinic acid pathway 161 7 C4H (57) View species results
Steroid pathway 89 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1595 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 406 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
silene_latifolia_GWHPCBIJ001752 Alkaloid BBE low borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ001927 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ001928 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ003058 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
silene_latifolia_GWHPCBIJ006050 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ006053 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ006055 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ006231 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
silene_latifolia_GWHPCBIJ006616 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ006630 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ010145 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
silene_latifolia_GWHPCBIJ010274 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ012969 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
silene_latifolia_GWHPCBIJ014702 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ014704 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ015387 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ019254 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ023335 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ023343 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ023345 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ023347 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ030590 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ030832 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
silene_latifolia_GWHPCBIJ030833 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
silene_latifolia_GWHPCBIJ030834 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
silene_latifolia_GWHPCBIJ030835 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
silene_latifolia_GWHPCBIJ035250 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH