PlantSME Plant secondary metabolism enzyme database

Silene latifolia (silene_latifolia)

Imported from atlas release summary for Silene latifolia.

1810
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.45% Alkaloid pathway 22.54% Phenylpropanoid pathway 20.39% Flavonoid pathway 13.81% Rosmarinic acid pathway 8.9% Steroid pathway 4.92%
Family Distribution
BAHD 6.07% C3'H/CYP98A 5.82% C4H 5.64% UGT 4.24% UFGT 4.04% POD 3.99% 7DLGT 3.97% IFS 3.47%
Other Families 62.77%
More Families (96)
CYP76 153 3.45% F3H 152 3.43% 4CL 147 3.31% T3O 144 3.25% DWF4/CYP90B1 114 2.57% NMT 102 2.3% CODM/T6ODM 93 2.1% H6H 85 1.92% F3'H/CYP75B 84 1.89% RAS 71 1.6% BR6OX2/CYP85A2 70 1.58% HCT 66 1.49% STR 65 1.47% CAD 61 1.38% PYKS 55 1.24% CAS 54 1.22% TRI/TRII 53 1.2% CYP71 52 1.17% PMT 46 1.04% TPS 44 0.99% GES 43 0.97% CSE 42 0.95% COMT 41 0.92% SMT1/SMT2/SMT3 40 0.9% G8O/G8H 39 0.88% CYP90D1 39 0.88% 7DLH 37 0.83% GS 36 0.81% LAC 32 0.72% IFR 31 0.7% SLS 29 0.65% NCS 29 0.65% ANR 28 0.63% BBE 27 0.61% T16H 27 0.61% SGD 26 0.59% 16OMT 25 0.56% TAT 25 0.56% FNS 24 0.54% CYP51G1 24 0.54% F3'5'H/CYP75A 22 0.5% IO 21 0.47% ANS/LDOX 21 0.47% CHS 21 0.47% BR6OX1/CYP85A1 21 0.47% CPD/CYP90A1 19 0.43% F5H/CYP84A 18 0.41% CCR 16 0.36% 8HGO 15 0.34% COR 15 0.34% TYDC_DDC 14 0.32% CNMT 12 0.27% MPO 12 0.27% CPR 12 0.27% FPPS 11 0.25% ROT3/CYP90C1 10 0.23% LAMT 9 0.2% PAL 9 0.2% HPPR 9 0.2% SQS/FDFT1 9 0.2% SQE 8 0.18% AACT 8 0.18% XMT_MXMT_DXMT 7 0.16% CYP719 7 0.16% DWF7 7 0.16% SMO1/SMO2 6 0.14% HMGR 6 0.14% FLS 5 0.11% CCoAOMT 5 0.11% DXS 5 0.11% GGPPS 5 0.11% MVK 5 0.11% ISY 4 0.09% DFR 4 0.09% CHI 4 0.09% HYD1 4 0.09% FK 4 0.09% DXR 4 0.09% TDC 3 0.07% CYP80B1 3 0.07% DWF1 3 0.07% DET2 3 0.07% PMK 3 0.07% MVD 3 0.07% ADC 2 0.05% IDI 2 0.05% GPPS 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 18 BAHD (209) View species results
Alkaloid pathway 408 22 7DLGT (78) View species results
Phenylpropanoid pathway 369 11 POD (160) View species results
Flavonoid pathway 250 11 UFGT (172) View species results
Rosmarinic acid pathway 161 7 C4H (57) View species results
Steroid pathway 89 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1595 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 406 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
silene_latifolia_GWHPCBIJ002967 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
silene_latifolia_GWHPCBIJ002968 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
silene_latifolia_GWHPCBIJ002969 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
silene_latifolia_GWHPCBIJ004248 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ010760 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ013381 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
silene_latifolia_GWHPCBIJ015619 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ018565 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ022453 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ022454 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ028303 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
silene_latifolia_GWHPCBIJ028304 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
silene_latifolia_GWHPCBIJ028305 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
silene_latifolia_GWHPCBIJ029524 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
silene_latifolia_GWHPCBIJ030152 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO