Silene latifolia (silene_latifolia)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.45% Alkaloid pathway 22.54% Phenylpropanoid pathway 20.39% Flavonoid pathway 13.81% Rosmarinic acid pathway 8.9% Steroid pathway 4.92%

Family Distribution

1810 Candidate Genes

BAHD 6.07% C3'H/CYP98A 5.82% C4H 5.64% UGT 4.24% UFGT 4.04% POD 3.99% 7DLGT 3.97% IFS 3.47%

Other Families 62.77%

More Families (96)

CYP76 153 3.45% F3H 152 3.43% 4CL 147 3.31% T3O 144 3.25% DWF4/CYP90B1 114 2.57% NMT 102 2.3% CODM/T6ODM 93 2.1% H6H 85 1.92% F3'H/CYP75B 84 1.89% RAS 71 1.6% BR6OX2/CYP85A2 70 1.58% HCT 66 1.49% STR 65 1.47% CAD 61 1.38% PYKS 55 1.24% CAS 54 1.22% TRI/TRII 53 1.2% CYP71 52 1.17% PMT 46 1.04% TPS 44 0.99% GES 43 0.97% CSE 42 0.95% COMT 41 0.92% SMT1/SMT2/SMT3 40 0.9% G8O/G8H 39 0.88% CYP90D1 39 0.88% 7DLH 37 0.83% GS 36 0.81% LAC 32 0.72% IFR 31 0.7% SLS 29 0.65% NCS 29 0.65% ANR 28 0.63% BBE 27 0.61% T16H 27 0.61% SGD 26 0.59% 16OMT 25 0.56% TAT 25 0.56% FNS 24 0.54% CYP51G1 24 0.54% F3'5'H/CYP75A 22 0.5% IO 21 0.47% ANS/LDOX 21 0.47% CHS 21 0.47% BR6OX1/CYP85A1 21 0.47% CPD/CYP90A1 19 0.43% F5H/CYP84A 18 0.41% CCR 16 0.36% 8HGO 15 0.34% COR 15 0.34% TYDC_DDC 14 0.32% CNMT 12 0.27% MPO 12 0.27% CPR 12 0.27% FPPS 11 0.25% ROT3/CYP90C1 10 0.23% LAMT 9 0.2% PAL 9 0.2% HPPR 9 0.2% SQS/FDFT1 9 0.2% SQE 8 0.18% AACT 8 0.18% XMT_MXMT_DXMT 7 0.16% CYP719 7 0.16% DWF7 7 0.16% SMO1/SMO2 6 0.14% HMGR 6 0.14% FLS 5 0.11% CCoAOMT 5 0.11% DXS 5 0.11% GGPPS 5 0.11% MVK 5 0.11% ISY 4 0.09% DFR 4 0.09% CHI 4 0.09% HYD1 4 0.09% FK 4 0.09% DXR 4 0.09% TDC 3 0.07% CYP80B1 3 0.07% DWF1 3 0.07% DET2 3 0.07% PMK 3 0.07% MVD 3 0.07% ADC 2 0.05% IDI 2 0.05% GPPS 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	533	18	BAHD (209)	View species results
Alkaloid pathway	408	22	7DLGT (78)	View species results
Phenylpropanoid pathway	369	11	POD (160)	View species results
Flavonoid pathway	250	11	UFGT (172)	View species results
Rosmarinic acid pathway	161	7	C4H (57)	View species results
Steroid pathway	89	12	CAS (37)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1595	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	406	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: TAT

Gene	Pathway	Family	Confidence	Status	Best Target
silene_latifolia_GWHPCBIJ000779	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ003085	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ003086	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ004532	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ009152	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ009813	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ013255	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ013472	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ013476	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ017453	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ018036	Rosmarinic Acid	TAT	medium	pass	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ020356	Rosmarinic Acid	TAT	low	borderline	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ021302	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ022760	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ023417	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ023428	Rosmarinic Acid	TAT	medium	pass	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ023436	Rosmarinic Acid	TAT	medium	pass	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ023463	Rosmarinic Acid	TAT	low	borderline	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ024651	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ025779	Rosmarinic Acid	TAT	low	borderline	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ025787	Rosmarinic Acid	TAT	low	borderline	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ029638	Rosmarinic Acid	TAT	medium	pass	TAT__00002__sp_Q9C969_ISS1_ARATH
silene_latifolia_GWHPCBIJ029788	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH
silene_latifolia_GWHPCBIJ031029	Rosmarinic Acid	TAT	medium	pass	TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
silene_latifolia_GWHPCBIJ033233	Rosmarinic Acid	TAT	medium	pass	TAT__00003__sp_Q9LVY1_TAT_ARATH