Silene latifolia (silene_latifolia)
Imported from atlas release summary for Silene latifolia.
1810
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1810
Candidate Genes
BAHD
6.07%
C3'H/CYP98A
5.82%
C4H
5.64%
UGT
4.24%
UFGT
4.04%
POD
3.99%
7DLGT
3.97%
IFS
3.47%
Other Families
62.77%
More Families (96)
CYP76
153
3.45%
F3H
152
3.43%
4CL
147
3.31%
T3O
144
3.25%
DWF4/CYP90B1
114
2.57%
NMT
102
2.3%
CODM/T6ODM
93
2.1%
H6H
85
1.92%
F3'H/CYP75B
84
1.89%
RAS
71
1.6%
BR6OX2/CYP85A2
70
1.58%
HCT
66
1.49%
STR
65
1.47%
CAD
61
1.38%
PYKS
55
1.24%
CAS
54
1.22%
TRI/TRII
53
1.2%
CYP71
52
1.17%
PMT
46
1.04%
TPS
44
0.99%
GES
43
0.97%
CSE
42
0.95%
COMT
41
0.92%
SMT1/SMT2/SMT3
40
0.9%
G8O/G8H
39
0.88%
CYP90D1
39
0.88%
7DLH
37
0.83%
GS
36
0.81%
LAC
32
0.72%
IFR
31
0.7%
SLS
29
0.65%
NCS
29
0.65%
ANR
28
0.63%
BBE
27
0.61%
T16H
27
0.61%
SGD
26
0.59%
16OMT
25
0.56%
TAT
25
0.56%
FNS
24
0.54%
CYP51G1
24
0.54%
F3'5'H/CYP75A
22
0.5%
IO
21
0.47%
ANS/LDOX
21
0.47%
CHS
21
0.47%
BR6OX1/CYP85A1
21
0.47%
CPD/CYP90A1
19
0.43%
F5H/CYP84A
18
0.41%
CCR
16
0.36%
8HGO
15
0.34%
COR
15
0.34%
TYDC_DDC
14
0.32%
CNMT
12
0.27%
MPO
12
0.27%
CPR
12
0.27%
FPPS
11
0.25%
ROT3/CYP90C1
10
0.23%
LAMT
9
0.2%
PAL
9
0.2%
HPPR
9
0.2%
SQS/FDFT1
9
0.2%
SQE
8
0.18%
AACT
8
0.18%
XMT_MXMT_DXMT
7
0.16%
CYP719
7
0.16%
DWF7
7
0.16%
SMO1/SMO2
6
0.14%
HMGR
6
0.14%
FLS
5
0.11%
CCoAOMT
5
0.11%
DXS
5
0.11%
GGPPS
5
0.11%
MVK
5
0.11%
ISY
4
0.09%
DFR
4
0.09%
CHI
4
0.09%
HYD1
4
0.09%
FK
4
0.09%
DXR
4
0.09%
TDC
3
0.07%
CYP80B1
3
0.07%
DWF1
3
0.07%
DET2
3
0.07%
PMK
3
0.07%
MVD
3
0.07%
ADC
2
0.05%
IDI
2
0.05%
GPPS
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 533 | 18 | BAHD (209) | View species results |
| Alkaloid pathway | 408 | 22 | 7DLGT (78) | View species results |
| Phenylpropanoid pathway | 369 | 11 | POD (160) | View species results |
| Flavonoid pathway | 250 | 11 | UFGT (172) | View species results |
| Rosmarinic acid pathway | 161 | 7 | C4H (57) | View species results |
| Steroid pathway | 89 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1595 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 406 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| silene_latifolia_GWHPCBIJ029180 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ029300 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ029302 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ029305 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| silene_latifolia_GWHPCBIJ029493 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| silene_latifolia_GWHPCBIJ029982 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| silene_latifolia_GWHPCBIJ030269 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ030651 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ030652 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ030654 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ032174 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ032175 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ035702 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ035703 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ036326 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| silene_latifolia_GWHPCBIJ036431 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |