PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.26% Alkaloid pathway 22.33% Phenylpropanoid pathway 20.96% Flavonoid pathway 11.66% Rosmarinic acid pathway 9.15% Steroid pathway 6.64%
Family Distribution
C4H 6.52% C3'H/CYP98A 6.0% BAHD 5.85% CYP76 3.91% POD 3.82% IFS 3.78% UFGT 3.67% UGT 3.61%
Other Families 62.84%
More Families (96)
7DLGT 184 3.5% T3O 177 3.36% 4CL 159 3.02% NMT 155 2.94% F3H 149 2.83% DWF4/CYP90B1 143 2.72% STR 123 2.34% F3'H/CYP75B 94 1.79% CAD 94 1.79% CODM/T6ODM 93 1.77% CAS 82 1.56% BR6OX2/CYP85A2 78 1.48% CYP71 72 1.37% SMT1/SMT2/SMT3 71 1.35% HCT 65 1.23% CYP90D1 59 1.12% TPS 58 1.1% H6H 56 1.06% GES 56 1.06% G8O/G8H 55 1.04% TRI/TRII 55 1.04% TAT 47 0.89% SGD 46 0.87% BBE 46 0.87% RAS 46 0.87% LAC 45 0.85% T16H 43 0.82% IFR 43 0.82% GS 42 0.8% PMT 42 0.8% LAMT 40 0.76% FNS 36 0.68% IO 35 0.66% CSE 35 0.66% COMT 33 0.63% PYKS 32 0.61% ANR 32 0.61% 8HGO 31 0.59% NCS 31 0.59% 7DLH 30 0.57% F3'5'H/CYP75A 30 0.57% 16OMT 23 0.44% COR 22 0.42% BR6OX1/CYP85A1 22 0.42% SLS 21 0.4% CCR 21 0.4% PAL 20 0.38% F5H/CYP84A 20 0.38% CPD/CYP90A1 20 0.38% CNMT 18 0.34% CYP51G1 16 0.3% DFR 14 0.27% CCoAOMT 14 0.27% FPPS 14 0.27% MPO 13 0.25% ANS/LDOX 13 0.25% CHS 13 0.25% SQE 13 0.25% GGPPS 13 0.25% DXS 12 0.23% HPPR 11 0.21% SQS/FDFT1 10 0.19% ROT3/CYP90C1 8 0.15% DET2 8 0.15% TYDC_DDC 7 0.13% CYP80B1 7 0.13% CHI 7 0.13% SMO1/SMO2 7 0.13% XMT_MXMT_DXMT 6 0.11% ODC 6 0.11% CPR 6 0.11% AACT 6 0.11% MVK 6 0.11% ISY 5 0.09% FK 4 0.08% HMGR 4 0.08% CYP719 3 0.06% DXR 3 0.06% HMGS 3 0.06% MVD 3 0.06% ADC 2 0.04% 6OMT_4OMT_SOMT 2 0.04% TDC 2 0.04% FLS 2 0.04% DWF1 2 0.04% MCT/IspD 2 0.04% HDS/IspG 2 0.04% HYD1 1 0.02% CPI1 1 0.02% DWF7 1 0.02% DWF5 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
Reset
Gene Pathway Family Confidence Status Best Target
Tcac08G0005380.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Tcac08G0005390.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Tcac08G0005660.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tcac08G0011980.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tcac08G0012890.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tcac08G0012900.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tcac09G0016440.1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Tcac09G0032460.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Tcac10G0008640.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH