PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Tcac01G0002290.1 Alkaloid T16H medium borderline
Tcac01G0014980.1 Alkaloid T16H medium borderline
Tcac01G0020700.1 Alkaloid T16H medium borderline
Tcac01G0031630.1 Alkaloid T16H medium borderline
Tcac02G0009340.1 Alkaloid T16H medium borderline
Tcac03G0003020.1 Alkaloid T16H medium borderline
Tcac03G0003070.1 Alkaloid T16H medium borderline
Tcac03G0003110.1 Alkaloid T16H medium borderline
Tcac03G0008420.1 Alkaloid T16H medium borderline
Tcac03G0009910.1 Alkaloid T16H medium borderline
Tcac03G0009920.1 Alkaloid T16H medium borderline
Tcac03G0014010.1 Alkaloid T16H medium borderline
Tcac03G0014420.1 Alkaloid T16H low borderline
Tcac04G0001740.1 Alkaloid T16H medium borderline
Tcac04G0001770.1 Alkaloid T16H medium borderline
Tcac04G0006160.1 Alkaloid T16H medium borderline
Tcac04G0012230.1 Alkaloid T16H medium borderline
Tcac05G0019940.1 Alkaloid T16H low borderline
Tcac06G0000690.1 Alkaloid T16H medium borderline
Tcac06G0004920.1 Alkaloid T16H low borderline
Tcac06G0009350.1 Alkaloid T16H medium borderline
Tcac07G0001710.1 Alkaloid T16H medium borderline
Tcac07G0001720.1 Alkaloid T16H medium borderline
Tcac07G0001720.2 Alkaloid T16H medium borderline
Tcac07G0001720.4 Alkaloid T16H medium borderline
Tcac07G0015770.1 Alkaloid T16H medium borderline
Tcac08G0000670.1 Alkaloid T16H medium borderline
Tcac08G0001520.1 Alkaloid T16H medium borderline
Tcac08G0001520.2 Alkaloid T16H medium borderline
Tcac08G0001640.1 Alkaloid T16H low borderline
Tcac08G0001720.1 Alkaloid T16H medium pass
Tcac08G0003850.1 Alkaloid T16H medium borderline
Tcac08G0005940.1 Alkaloid T16H medium borderline
Tcac08G0009090.1 Alkaloid T16H medium borderline
Tcac08G0017950.1 Alkaloid T16H medium borderline
Tcac08G0017990.1 Alkaloid T16H medium borderline
Tcac09G0018380.1 Alkaloid T16H medium borderline
Tcac09G0022610.1 Alkaloid T16H medium borderline
Tcac09G0033950.1 Alkaloid T16H medium borderline
Tcac10G0010240.1 Alkaloid T16H medium borderline
Tcac10G0014090.1 Alkaloid T16H low borderline
Tcac10G0016790.1 Alkaloid T16H medium borderline
TcacsCAffold_780000550.1 Alkaloid T16H medium borderline