PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
Tcac01G0002320.1 Flavonoid IFS medium borderline
Tcac01G0002550.1 Flavonoid IFS low borderline
Tcac01G0004540.1 Flavonoid IFS medium borderline
Tcac01G0004550.1 Flavonoid IFS medium borderline
Tcac01G0006330.1 Flavonoid IFS medium borderline
Tcac01G0006350.1 Flavonoid IFS medium borderline
Tcac01G0006360.1 Flavonoid IFS medium borderline
Tcac01G0006370.1 Flavonoid IFS medium borderline
Tcac01G0006380.1 Flavonoid IFS medium borderline
Tcac01G0006380.2 Flavonoid IFS medium borderline
Tcac01G0006380.3 Flavonoid IFS medium borderline
Tcac01G0006380.4 Flavonoid IFS medium borderline
Tcac01G0009540.1 Flavonoid IFS medium borderline
Tcac01G0009540.2 Flavonoid IFS medium borderline
Tcac01G0010630.1 Flavonoid IFS medium borderline
Tcac01G0019180.1 Flavonoid IFS low borderline
Tcac01G0020720.1 Flavonoid IFS medium borderline
Tcac01G0020730.1 Flavonoid IFS medium borderline
Tcac01G0031630.1 Flavonoid IFS medium borderline
Tcac01G0033260.1 Flavonoid IFS low borderline
Tcac01G0033260.2 Flavonoid IFS low borderline
Tcac01G0034170.1 Flavonoid IFS low borderline
Tcac01G0034200.1 Flavonoid IFS low borderline
Tcac01G0034750.1 Flavonoid IFS low borderline
Tcac01G0034760.1 Flavonoid IFS low borderline
Tcac01G0034760.2 Flavonoid IFS low borderline
Tcac01G0034770.1 Flavonoid IFS low borderline
Tcac01G0034770.2 Flavonoid IFS low borderline
Tcac01G0034770.3 Flavonoid IFS low borderline
Tcac01G0034780.1 Flavonoid IFS low borderline
Tcac02G0001770.1 Flavonoid IFS low borderline
Tcac02G0002710.1 Flavonoid IFS medium borderline
Tcac02G0007390.1 Flavonoid IFS medium borderline
Tcac02G0009350.1 Flavonoid IFS low borderline
Tcac02G0009360.1 Flavonoid IFS low borderline
Tcac02G0009390.1 Flavonoid IFS low borderline
Tcac02G0009790.1 Flavonoid IFS low borderline
Tcac02G0009790.2 Flavonoid IFS low borderline
Tcac02G0015460.1 Flavonoid IFS low borderline
Tcac02G0017870.1 Flavonoid IFS low borderline
Tcac02G0019820.1 Flavonoid IFS low borderline
Tcac02G0024120.1 Flavonoid IFS medium borderline
Tcac02G0024140.1 Flavonoid IFS medium borderline
Tcac02G0024150.1 Flavonoid IFS medium borderline
Tcac02G0024260.1 Flavonoid IFS low borderline
Tcac02G0024700.1 Flavonoid IFS medium borderline
Tcac02G0027350.1 Flavonoid IFS low borderline
Tcac02G0029710.1 Flavonoid IFS low borderline
Tcac02G0031460.1 Flavonoid IFS low borderline
Tcac03G0003010.1 Flavonoid IFS low borderline