PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Tcac01G0003230.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac01G0003820.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac01G0004870.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac01G0004870.2 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac01G0010230.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac01G0010250.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac01G0010280.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac01G0018590.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac01G0018590.2 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac01G0018600.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac01G0018620.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac01G0018630.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac01G0031490.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac02G0008090.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac02G0013870.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac03G0004880.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac05G0002070.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac05G0002490.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac05G0002490.2 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac05G0002500.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac05G0003550.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac05G0003560.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac05G0003570.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac05G0003600.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac05G0005970.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac05G0005980.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac05G0007110.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac07G0016110.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac08G0004340.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Tcac08G0018360.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac08G0018370.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac08G0018370.2 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac08G0018390.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac09G0019200.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac09G0019220.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Tcac09G0028330.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac09G0029480.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac09G0030790.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac09G0030940.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac09G0030960.1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
Tcac09G0031400.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Tcac09G0031410.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Tcac09G0033300.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac10G0000920.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Tcac10G0002620.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH