PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Tcac01G0001440.1 Alkaloid LAMT medium borderline
Tcac01G0002930.1 Alkaloid LAMT medium borderline
Tcac01G0002950.1 Alkaloid LAMT medium borderline
Tcac01G0002970.1 Alkaloid LAMT medium borderline
Tcac02G0007940.1 Alkaloid LAMT medium borderline
Tcac02G0007940.2 Alkaloid LAMT medium borderline
Tcac02G0028210.1 Alkaloid LAMT medium borderline
Tcac02G0028220.1 Alkaloid LAMT medium borderline
Tcac02G0028250.1 Alkaloid LAMT medium borderline
Tcac02G0028260.1 Alkaloid LAMT medium borderline
Tcac03G0004650.1 Alkaloid LAMT medium borderline
Tcac03G0004650.2 Alkaloid LAMT medium borderline
Tcac03G0004650.3 Alkaloid LAMT medium borderline
Tcac03G0004660.1 Alkaloid LAMT medium borderline
Tcac04G0010850.1 Alkaloid LAMT medium borderline
Tcac04G0010860.1 Alkaloid LAMT medium borderline
Tcac04G0010870.1 Alkaloid LAMT medium borderline
Tcac04G0010870.2 Alkaloid LAMT medium borderline
Tcac04G0010880.1 Alkaloid LAMT medium borderline
Tcac04G0010880.2 Alkaloid LAMT medium borderline
Tcac04G0010890.1 Alkaloid LAMT medium borderline
Tcac07G0000420.1 Alkaloid LAMT low borderline
Tcac07G0000440.1 Alkaloid LAMT low borderline
Tcac07G0000460.2 Alkaloid LAMT low borderline
Tcac07G0002730.1 Alkaloid LAMT medium borderline
Tcac07G0002730.2 Alkaloid LAMT medium borderline
Tcac07G0004650.1 Alkaloid LAMT medium borderline
Tcac10G0002330.1 Alkaloid LAMT medium borderline
Tcac10G0002350.1 Alkaloid LAMT medium borderline
Tcac10G0002360.1 Alkaloid LAMT medium borderline
Tcac10G0002370.1 Alkaloid LAMT medium borderline
Tcac10G0002380.1 Alkaloid LAMT medium borderline
Tcac10G0002400.1 Alkaloid LAMT medium borderline
Tcac10G0002420.1 Alkaloid LAMT medium borderline
Tcac10G0002430.1 Alkaloid LAMT medium borderline
Tcac10G0002450.1 Alkaloid LAMT medium borderline
Tcac10G0002450.2 Alkaloid LAMT medium borderline
Tcac10G0015370.1 Alkaloid LAMT medium borderline
Tcac10G0015380.1 Alkaloid LAMT medium borderline
Tcac10G0015400.1 Alkaloid LAMT medium borderline