PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
Tcac01G0004060.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Tcac02G0005150.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Tcac04G0010100.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Tcac04G0010110.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Tcac04G0010130.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Tcac06G0012790.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac06G0012790.2 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac06G0012790.3 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac06G0012790.4 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac06G0012790.5 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac06G0012800.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac07G0013550.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Tcac09G0027330.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH