PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status
Tcac01G0018020.1 Terpenoid AACT low borderline
Tcac01G0018830.1 Terpenoid AACT medium borderline
Tcac01G0021590.1 Terpenoid AACT medium borderline
Tcac04G0019040.1 Terpenoid AACT medium borderline
Tcac04G0019040.2 Terpenoid AACT medium borderline
Tcac06G0022210.1 Terpenoid AACT medium borderline
Tcac01G0000030.1 Terpenoid BAHD medium pass
Tcac01G0000030.2 Terpenoid BAHD medium pass
Tcac01G0000030.3 Terpenoid BAHD medium pass
Tcac01G0000030.4 Terpenoid BAHD medium pass
Tcac01G0000100.1 Terpenoid BAHD medium pass
Tcac01G0000100.2 Terpenoid BAHD medium pass
Tcac01G0000920.1 Terpenoid BAHD medium pass
Tcac01G0000920.2 Terpenoid BAHD medium pass
Tcac01G0005840.1 Terpenoid BAHD low borderline
Tcac01G0007240.1 Terpenoid BAHD medium pass
Tcac01G0011290.1 Terpenoid BAHD medium pass
Tcac01G0015670.1 Terpenoid BAHD medium pass
Tcac01G0016620.1 Terpenoid BAHD medium pass
Tcac01G0020010.1 Terpenoid BAHD medium pass
Tcac01G0023340.1 Terpenoid BAHD medium pass
Tcac01G0029370.1 Terpenoid BAHD medium pass
Tcac01G0030000.1 Terpenoid BAHD medium pass
Tcac01G0030050.1 Terpenoid BAHD medium pass
Tcac01G0030120.1 Terpenoid BAHD medium pass
Tcac01G0031060.1 Terpenoid BAHD medium pass
Tcac01G0031760.1 Terpenoid BAHD medium pass
Tcac01G0032570.1 Terpenoid BAHD medium pass
Tcac01G0033280.1 Terpenoid BAHD medium pass
Tcac01G0033280.2 Terpenoid BAHD medium pass
Tcac01G0033280.3 Terpenoid BAHD medium pass
Tcac01G0034560.1 Terpenoid BAHD medium pass
Tcac01G0034560.2 Terpenoid BAHD medium pass
Tcac01G0035180.1 Terpenoid BAHD medium pass
Tcac01G0037710.1 Terpenoid BAHD medium pass
Tcac01G0037710.2 Terpenoid BAHD medium pass
Tcac01G0037710.3 Terpenoid BAHD medium pass
Tcac01G0037720.1 Terpenoid BAHD medium pass
Tcac01G0037820.1 Terpenoid BAHD medium pass
Tcac01G0038570.1 Terpenoid BAHD medium pass
Tcac01G0038580.1 Terpenoid BAHD medium pass
Tcac01G0038580.2 Terpenoid BAHD medium pass
Tcac02G0003440.1 Terpenoid BAHD medium pass
Tcac02G0003470.1 Terpenoid BAHD low borderline
Tcac02G0003480.1 Terpenoid BAHD medium pass
Tcac02G0003510.1 Terpenoid BAHD medium pass
Tcac02G0004540.1 Terpenoid BAHD medium pass
Tcac02G0010010.1 Terpenoid BAHD medium pass
Tcac02G0011540.1 Terpenoid BAHD low borderline
Tcac02G0011830.1 Terpenoid BAHD medium pass