PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
Reset
Gene Pathway Family Confidence Status
Tcac01G0030000.1 Alkaloid PMT medium pass
Tcac02G0022440.1 Alkaloid PMT medium borderline
Tcac03G0000850.1 Alkaloid PMT medium borderline
Tcac03G0000870.1 Alkaloid PMT medium borderline
Tcac03G0011560.1 Alkaloid PMT low borderline
Tcac03G0011560.2 Alkaloid PMT low borderline
Tcac03G0017380.1 Alkaloid PMT medium borderline
Tcac03G0017380.10 Alkaloid PMT medium borderline
Tcac03G0017380.11 Alkaloid PMT medium borderline
Tcac03G0017380.12 Alkaloid PMT medium borderline
Tcac03G0017380.13 Alkaloid PMT medium borderline
Tcac03G0017380.2 Alkaloid PMT medium borderline
Tcac03G0017380.3 Alkaloid PMT medium borderline
Tcac03G0017380.4 Alkaloid PMT medium borderline
Tcac03G0017380.5 Alkaloid PMT medium borderline
Tcac03G0017380.6 Alkaloid PMT medium borderline
Tcac03G0017380.7 Alkaloid PMT medium borderline
Tcac03G0017380.8 Alkaloid PMT medium borderline
Tcac03G0017380.9 Alkaloid PMT medium borderline
Tcac03G0022120.1 Alkaloid PMT low borderline
Tcac04G0003960.1 Alkaloid PMT medium pass
Tcac04G0020820.1 Alkaloid PMT medium pass
Tcac04G0020820.2 Alkaloid PMT low borderline
Tcac04G0020820.3 Alkaloid PMT medium pass
Tcac04G0021950.1 Alkaloid PMT low borderline
Tcac05G0020150.1 Alkaloid PMT medium pass
Tcac05G0020160.1 Alkaloid PMT medium pass
Tcac05G0020180.1 Alkaloid PMT medium pass
Tcac05G0020190.1 Alkaloid PMT medium pass
Tcac05G0020210.1 Alkaloid PMT medium pass
Tcac05G0020220.1 Alkaloid PMT medium pass
Tcac05G0020230.1 Alkaloid PMT medium pass
Tcac05G0020240.1 Alkaloid PMT medium pass
Tcac05G0020250.1 Alkaloid PMT low borderline
Tcac06G0004130.1 Alkaloid PMT low borderline
Tcac08G0005600.1 Alkaloid PMT low borderline
Tcac08G0005650.1 Alkaloid PMT low borderline
Tcac09G0002740.1 Alkaloid PMT low borderline
Tcac09G0002750.1 Alkaloid PMT low borderline
Tcac09G0006060.1 Alkaloid PMT medium pass
Tcac10G0001290.1 Alkaloid PMT low borderline
Tcac10G0001290.2 Alkaloid PMT low borderline