PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Tcac01G0017540.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac01G0028290.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac03G0007090.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac03G0021110.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac03G0022480.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac03G0022480.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac03G0022500.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac04G0026860.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac04G0026900.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac04G0026930.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac04G0026960.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac04G0027000.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac04G0027050.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac05G0003490.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac05G0019050.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac05G0019060.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac05G0019070.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac05G0019080.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Tcac05G0019090.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac06G0019510.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac06G0019510.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac06G0019510.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac07G0007510.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Tcac07G0007520.1 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
Tcac07G0014380.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac08G0011560.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac08G0011580.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac08G0011580.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac10G0003690.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac10G0003720.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Tcac10G0003720.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA